fix: accumulate multiple --allowedTools flags for Agent SDK (#719)

* fix: merge allowedTools from claudeArgs when using Agent SDK

When USE_AGENT_SDK=true, the allowedTools from claudeArgs (which contains
tag mode's required tools like mcp__github_comment__update_claude_comment)
were being lost because parseClaudeArgsToExtraArgs converts args to a
Record<string, string>, and the SDK was using sdkOptions.allowedTools
(from direct options) instead of merging with extraArgs.allowedTools.

This fix:
- Extracts allowedTools/disallowedTools from extraArgs after parsing
- Merges them with any direct options.allowedTools/disallowedTools
- Removes them from extraArgs to prevent duplicate CLI flags
- Passes the merged list as sdkOptions.allowedTools

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: accumulate multiple --allowedTools flags in claudeArgs

When tag mode adds its --allowedTools (with MCP tools) and the user also
provides --allowedTools in their claude_args, the parseClaudeArgsToExtraArgs
function was only keeping the last value. This caused tag mode's required
tools like mcp__github_comment__update_claude_comment to be lost.

Now allowedTools and disallowedTools flags accumulate their values when
they appear multiple times in claudeArgs, so both tag mode's tools and
user's tools are preserved.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>

base-action/test/parse-sdk-options.test.ts

@@ -0,0 +1,163 @@
+#!/usr/bin/env bun
+
+import { describe, test, expect } from "bun:test";
+import { parseSdkOptions } from "../src/parse-sdk-options";
+import type { ClaudeOptions } from "../src/run-claude";
+
+describe("parseSdkOptions", () => {
+  describe("allowedTools merging", () => {
+    test("should extract allowedTools from claudeArgs", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--allowedTools "Edit,Read,Write"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual(["Edit", "Read", "Write"]);
+      expect(result.sdkOptions.extraArgs?.["allowedTools"]).toBeUndefined();
+    });
+
+    test("should extract allowedTools from claudeArgs with MCP tools", () => {
+      const options: ClaudeOptions = {
+        claudeArgs:
+          '--allowedTools "Edit,Read,mcp__github_comment__update_claude_comment"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual([
+        "Edit",
+        "Read",
+        "mcp__github_comment__update_claude_comment",
+      ]);
+    });
+
+    test("should accumulate multiple --allowedTools flags from claudeArgs", () => {
+      // This simulates tag mode adding its tools, then user adding their own
+      const options: ClaudeOptions = {
+        claudeArgs:
+          '--allowedTools "Edit,Read,mcp__github_comment__update_claude_comment" --model "claude-3" --allowedTools "Bash(npm install),mcp__github__get_issue"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual([
+        "Edit",
+        "Read",
+        "mcp__github_comment__update_claude_comment",
+        "Bash(npm install)",
+        "mcp__github__get_issue",
+      ]);
+    });
+
+    test("should merge allowedTools from both claudeArgs and direct options", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--allowedTools "Edit,Read"',
+        allowedTools: "Write,Glob",
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual([
+        "Edit",
+        "Read",
+        "Write",
+        "Glob",
+      ]);
+    });
+
+    test("should deduplicate allowedTools when merging", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--allowedTools "Edit,Read"',
+        allowedTools: "Edit,Write",
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual(["Edit", "Read", "Write"]);
+    });
+
+    test("should use only direct options when claudeArgs has no allowedTools", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--model "claude-3-5-sonnet"',
+        allowedTools: "Edit,Read",
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toEqual(["Edit", "Read"]);
+    });
+
+    test("should return undefined allowedTools when neither source has it", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--model "claude-3-5-sonnet"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.allowedTools).toBeUndefined();
+    });
+
+    test("should remove allowedTools from extraArgs after extraction", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--allowedTools "Edit,Read" --model "claude-3-5-sonnet"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.extraArgs?.["allowedTools"]).toBeUndefined();
+      expect(result.sdkOptions.extraArgs?.["model"]).toBe("claude-3-5-sonnet");
+    });
+  });
+
+  describe("disallowedTools merging", () => {
+    test("should extract disallowedTools from claudeArgs", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--disallowedTools "Bash,Write"',
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.disallowedTools).toEqual(["Bash", "Write"]);
+      expect(result.sdkOptions.extraArgs?.["disallowedTools"]).toBeUndefined();
+    });
+
+    test("should merge disallowedTools from both sources", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: '--disallowedTools "Bash"',
+        disallowedTools: "Write",
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.disallowedTools).toEqual(["Bash", "Write"]);
+    });
+  });
+
+  describe("other extraArgs passthrough", () => {
+    test("should pass through mcp-config in extraArgs", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: `--mcp-config '{"mcpServers":{}}' --allowedTools "Edit"`,
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.extraArgs?.["mcp-config"]).toBe(
+        '{"mcpServers":{}}',
+      );
+    });
+
+    test("should pass through json-schema in extraArgs", () => {
+      const options: ClaudeOptions = {
+        claudeArgs: `--json-schema '{"type":"object"}'`,
+      };
+
+      const result = parseSdkOptions(options);
+
+      expect(result.sdkOptions.extraArgs?.["json-schema"]).toBe(
+        '{"type":"object"}',
+      );
+      expect(result.hasJsonSchema).toBe(true);
+    });
+  });
+});