refactor: move allowedBots parameter to context object

Move allowedBots from function parameter to context.inputs to maintain
consistency with other input handling throughout the codebase.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

test/install-mcp-server.test.ts

@@ -35,6 +35,7 @@ describe("prepareMcpConfig", () => {
       useStickyComment: false,
       additionalPermissions: new Map(),
       useCommitSigning: false,
+      allowedBots: "",
     },
   };