* fix: merge allowedTools from claudeArgs when using Agent SDK
When USE_AGENT_SDK=true, the allowedTools from claudeArgs (which contains
tag mode's required tools like mcp__github_comment__update_claude_comment)
were being lost because parseClaudeArgsToExtraArgs converts args to a
Record<string, string>, and the SDK was using sdkOptions.allowedTools
(from direct options) instead of merging with extraArgs.allowedTools.
This fix:
- Extracts allowedTools/disallowedTools from extraArgs after parsing
- Merges them with any direct options.allowedTools/disallowedTools
- Removes them from extraArgs to prevent duplicate CLI flags
- Passes the merged list as sdkOptions.allowedTools
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: accumulate multiple --allowedTools flags in claudeArgs
When tag mode adds its --allowedTools (with MCP tools) and the user also
provides --allowedTools in their claude_args, the parseClaudeArgsToExtraArgs
function was only keeping the last value. This caused tag mode's required
tools like mcp__github_comment__update_claude_comment to be lost.
Now allowedTools and disallowedTools flags accumulate their values when
they appear multiple times in claudeArgs, so both tag mode's tools and
user's tools are preserved.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
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Co-authored-by: Claude <noreply@anthropic.com>
