Add synchronize trigger to auto-review workflow

- Include main GitHub MCP server (Docker-based) by default
- Fetch and prefix GitHub context to prompts when in PR/issue context
- Users no longer need to manually configure GitHub tools

.claude/agents/deep-thinker.md

@@ -1,31 +0,0 @@
----
-name: deep-thinker
-description: A subagent that performs deep analysis with extended thinking
-tools:
-  - "*"
-proactive: false
----
-
-# Deep Thinker Subagent
-
-You are a specialized subagent designed to perform deep, thorough analysis of complex problems using extended thinking capabilities.
-
-## Your Purpose
-
-You excel at:
-- Breaking down complex problems into smaller components
-- Analyzing trade-offs and implications
-- Providing comprehensive, well-reasoned solutions
-- Exploring edge cases and potential issues
-
-## Instructions
-
-When given a task:
-1. Use extended thinking to thoroughly analyze the problem
-2. Consider multiple approaches and their trade-offs
-3. Identify potential issues or edge cases
-4. Provide a detailed, well-structured response
-
-## Important
-
-Always think deeply before responding. Take your time to ensure thoroughness and accuracy in your analysis.

.claude/commands/fix-ci-commit.md

@@ -1,54 +0,0 @@
----
-description: Fix CI failures and commit changes (for use when branch already exists)
-allowed_tools: "*"
----
-
-# Fix CI Failures and Commit
-
-You are on a branch that was created to fix CI failures. Your task is to fix the issues and commit the changes.
-
-## CI Failure Information
-
-$ARGUMENTS
-
-## Your Tasks
-
-1. **Analyze the failures** - Understand what went wrong from the logs
-2. **Fix the issues** - Make the necessary code changes
-3. **Commit your fixes** - Use git to commit all changes
-
-## Step-by-Step Instructions
-
-### 1. Fix the Issues
-
-Based on the error logs:
-- Fix syntax errors
-- Fix formatting issues  
-- Fix test failures
-- Fix any other CI problems
-
-### 2. Commit Your Changes (REQUIRED)
-
-After fixing ALL issues, you MUST:
-
-Use the `mcp__github_file_ops__commit_files` tool to commit all your changes with a descriptive message like:
-
-```
-Fix CI failures
-
-- Fixed syntax errors
-- Fixed formatting issues  
-- Fixed test failures
-[List actual fixes made]
-```
-
-**IMPORTANT**: You MUST use the MCP file ops tool to commit your changes. The workflow expects you to commit your changes.
-
-### 3. Verify (Optional)
-
-If possible, run verification commands:
-- `bun run format:check` for formatting
-- `bun test` for tests
-- `bun run typecheck` for TypeScript
-
-Begin by analyzing the failure logs and then fix the issues.

.claude/commands/fix-ci.md

@@ -1,67 +0,0 @@
----
-description: Analyze and fix CI failures by examining logs and making targeted fixes
-allowed_tools: "*"
----
-
-# Fix CI Failures
-
-You are tasked with analyzing CI failure logs and fixing the issues. Follow these steps:
-
-## Context Provided
-
-$ARGUMENTS
-
-## Step 1: Analyze the Failure
-
-Parse the provided CI failure information to understand:
-- Which jobs failed and why
-- The specific error messages and stack traces
-- Whether failures are test-related, build-related, or linting issues
-
-## Step 2: Search and Understand the Codebase
-
-Use search tools to locate the failing code:
-- Search for the failing test names or functions
-- Find the source files mentioned in error messages
-- Review related configuration files (package.json, tsconfig.json, etc.)
-
-## Step 3: Apply Targeted Fixes
-
-Make minimal, focused changes:
-- **For test failures**: Determine if the test or implementation needs fixing
-- **For type errors**: Fix type definitions or correct the code logic
-- **For linting issues**: Apply formatting using the project's tools
-- **For build errors**: Resolve dependency or configuration issues
-- **For missing imports**: Add the necessary imports or install packages
-
-Requirements:
-- Only fix the actual CI failures, avoid unrelated changes
-- Follow existing code patterns and conventions
-- Ensure changes are production-ready, not temporary hacks
-- Preserve existing functionality while fixing issues
-
-## Step 4: Commit Changes
-
-After applying ALL fixes:
-1. Use the `mcp__github_file_ops__commit_files` tool to commit your changes
-2. Include a descriptive commit message explaining what was fixed
-3. Document which CI jobs/tests were addressed in the commit message
-4. Important: Use the MCP file ops tool, not git commands directly
-
-## Step 5: Verify Fixes Locally
-
-Run available verification commands:
-- Execute the failing tests locally to confirm they pass
-- Run the project's lint command (check package.json for scripts)
-- Run type checking if available
-- Execute any build commands to ensure compilation succeeds
-
-## Important Guidelines
-
-- Focus exclusively on fixing the reported CI failures
-- Maintain code quality and follow the project's established patterns
-- If a fix requires significant refactoring, document why it's necessary
-- When multiple solutions exist, choose the simplest one that maintains code quality
-- Add clear comments only if the fix is non-obvious
-
-Begin by analyzing the failure details provided above.

.claude/commands/review.md

@@ -1,22 +0,0 @@
----
-allowed-tools: Bash(gh pr comment:*), Bash(gh pr diff:*), Bash(gh pr view:*), Read, Glob, Grep
-description: Code review a pull request
----
-
-Review the current pull request and provide feedback.
-
-1. Use `gh pr view` to get the PR details and `gh pr diff` to see the changes
-2. Look for potential bugs, issues, or improvements
-3. Always post a comment with your findings using `gh pr comment`
-
-Format your comment like this:
-
-## Code Review
-
-[Your feedback here - be specific and constructive]
-
-- If you find issues, describe them clearly
-- If everything looks good, say so
-- Link to specific lines when relevant
-
-🤖 Generated with [Claude Code](https://claude.ai/code)

.github/workflows/auto-fix-ci-inline.yml

@@ -1,177 +0,0 @@
-name: Auto Fix CI Failures (Inline)
-
-on:
-  workflow_run:
-    workflows: ["CI"]
-    types:
-      - completed
-
-permissions:
-  contents: write
-  pull-requests: write
-  actions: read
-  issues: write
-
-jobs:
-  auto-fix:
-    if: |
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.name != 'Auto Fix CI Failures' &&
-      github.event.workflow_run.name != 'Auto Fix CI Failures (Inline)'
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.workflow_run.head_branch }}
-          fetch-depth: 0
-          token: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Setup git
-        run: |
-          git config --global user.name "claude[bot]"
-          git config --global user.email "198276+claude[bot]@users.noreply.github.com"
-
-      - name: Create fix branch
-        id: branch
-        run: |
-          BRANCH_NAME="claude-auto-fix-ci-${{ github.event.workflow_run.head_branch }}-${{ github.run_id }}"
-          git checkout -b "$BRANCH_NAME"
-          echo "branch_name=$BRANCH_NAME" >> $GITHUB_OUTPUT
-
-      - name: Get CI failure details
-        id: failure_details
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const run = await github.rest.actions.getWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-            
-            const jobs = await github.rest.actions.listJobsForWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-            
-            const failedJobs = jobs.data.jobs.filter(job => job.conclusion === 'failure');
-            
-            let errorLogs = [];
-            for (const job of failedJobs) {
-              const logs = await github.rest.actions.downloadJobLogsForWorkflowRun({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                job_id: job.id
-              });
-              errorLogs.push({
-                jobName: job.name,
-                logs: logs.data
-              });
-            }
-            
-            return {
-              runUrl: run.data.html_url,
-              failedJobs: failedJobs.map(j => j.name),
-              errorLogs: errorLogs
-            };
-
-      - name: Fix CI failures with Claude
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          prompt: |
-            You are tasked with analyzing CI failure logs and fixing the issues. Follow these steps:
-            
-            ## Context Provided
-            
-            Failed CI Run: ${{ fromJSON(steps.failure_details.outputs.result).runUrl }}
-            Failed Jobs: ${{ join(fromJSON(steps.failure_details.outputs.result).failedJobs, ', ') }}
-            
-            Error logs:
-            ${{ toJSON(fromJSON(steps.failure_details.outputs.result).errorLogs) }}
-            
-            ## Step 1: Analyze the Failure
-            
-            Parse the provided CI failure information to understand:
-            - Which jobs failed and why
-            - The specific error messages and stack traces
-            - Whether failures are test-related, build-related, or linting issues
-            
-            ## Step 2: Search and Understand the Codebase
-            
-            Use search tools to locate the failing code:
-            - Search for the failing test names or functions
-            - Find the source files mentioned in error messages
-            - Review related configuration files (package.json, tsconfig.json, etc.)
-            
-            ## Step 3: Apply Targeted Fixes
-            
-            Make minimal, focused changes:
-            - **For test failures**: Determine if the test or implementation needs fixing
-            - **For type errors**: Fix type definitions or correct the code logic
-            - **For linting issues**: Apply formatting using the project's tools
-            - **For build errors**: Resolve dependency or configuration issues
-            - **For missing imports**: Add the necessary imports or install packages
-            
-            Requirements:
-            - Only fix the actual CI failures, avoid unrelated changes
-            - Follow existing code patterns and conventions
-            - Ensure changes are production-ready, not temporary hacks
-            - Preserve existing functionality while fixing issues
-            
-            ## Step 4: Commit Changes
-            
-            After applying ALL fixes:
-            1. Stage all modified files with `git add -A` 
-            2. Commit with: `git commit -m "Fix CI failures: prettier formatting and syntax errors"`
-            3. Important: You MUST commit your changes - the branch already exists
-            
-            ## Step 5: Verify Fixes Locally
-            
-            Run available verification commands:
-            - Execute the failing tests locally to confirm they pass
-            - Run the project's lint command (check package.json for scripts)
-            - Run type checking if available
-            - Execute any build commands to ensure compilation succeeds
-            
-            ## Important Guidelines
-            
-            - Focus exclusively on fixing the reported CI failures
-            - Maintain code quality and follow the project's established patterns
-            - If a fix requires significant refactoring, document why it's necessary
-            - When multiple solutions exist, choose the simplest one that maintains code quality
-            
-            Begin by analyzing the failure details provided above.
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          timeout_minutes: "30"
-          use_sticky_comment: "true"
-          use_commit_signing: "true"
-          allowed_tools: "Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash,mcp__github_file_ops__commit_files,mcp__github_file_ops__delete_files"
-          claude_args: "--max-turns 15"
-
-      - name: Push fix branch
-        if: success()
-        run: |
-          git push origin ${{ steps.branch.outputs.branch_name }}
-
-      - name: Create pull request comment
-        if: success()
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const branchName = '${{ steps.branch.outputs.branch_name }}';
-            const baseBranch = '${{ github.event.workflow_run.head_branch }}';
-            const prUrl = `https://github.com/${context.repo.owner}/${context.repo.repo}/compare/${baseBranch}...${branchName}?quick_pull=1`;
-            
-            const issueNumber = ${{ github.event.workflow_run.pull_requests[0] && github.event.workflow_run.pull_requests[0].number || 'null' }};
-            
-            if (issueNumber) {
-              await github.rest.issues.createComment({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                issue_number: issueNumber,
-                body: `## 🤖 CI Auto-Fix Available\n\nClaude has analyzed the CI failures and prepared fixes.\n\n[**→ Create pull request to fix CI**](${prUrl})\n\n_This fix was generated automatically based on the [failed CI run](${{ fromJSON(steps.failure_details.outputs.result).runUrl }})._`
-              });
-            }

.github/workflows/auto-fix-ci.yml

@@ -1,119 +0,0 @@
-name: Auto Fix CI Failures
-
-on:
-  workflow_run:
-    workflows: ["CI"]
-    types:
-      - completed
-
-permissions:
-  contents: write
-  pull-requests: write
-  actions: read
-  issues: write
-
-jobs:
-  auto-fix:
-    if: |
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.name != 'Auto Fix CI Failures'
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.workflow_run.head_branch }}
-          fetch-depth: 0
-          token: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Setup git
-        run: |
-          git config --global user.name "claude[bot]"
-          git config --global user.email "198276+claude[bot]@users.noreply.github.com"
-
-      - name: Create fix branch
-        id: branch
-        run: |
-          BRANCH_NAME="claude-auto-fix-ci-${{ github.event.workflow_run.head_branch }}-${{ github.run_id }}"
-          git checkout -b "$BRANCH_NAME"
-          echo "branch_name=$BRANCH_NAME" >> $GITHUB_OUTPUT
-
-      - name: Get CI failure details
-        id: failure_details
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const run = await github.rest.actions.getWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-            
-            const jobs = await github.rest.actions.listJobsForWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-            
-            const failedJobs = jobs.data.jobs.filter(job => job.conclusion === 'failure');
-            
-            let errorLogs = [];
-            for (const job of failedJobs) {
-              const logs = await github.rest.actions.downloadJobLogsForWorkflowRun({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                job_id: job.id
-              });
-              errorLogs.push({
-                jobName: job.name,
-                logs: logs.data
-              });
-            }
-            
-            return {
-              runUrl: run.data.html_url,
-              failedJobs: failedJobs.map(j => j.name),
-              errorLogs: errorLogs
-            };
-
-      - name: Fix CI failures with Claude
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          prompt: |
-            /fix-ci-commit Failed CI Run: ${{ fromJSON(steps.failure_details.outputs.result).runUrl }}
-            Failed Jobs: ${{ join(fromJSON(steps.failure_details.outputs.result).failedJobs, ', ') }}
-            
-            Error logs:
-            ${{ toJSON(fromJSON(steps.failure_details.outputs.result).errorLogs) }}
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          timeout_minutes: "30"
-          use_sticky_comment: "true"
-          use_commit_signing: "true"
-          allowed_tools: "Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash,mcp__github_file_ops__commit_files,mcp__github_file_ops__delete_files"
-          claude_args: "--max-turns 15"
-
-      - name: Push fix branch
-        if: success()
-        run: |
-          git push origin ${{ steps.branch.outputs.branch_name }}
-
-      - name: Create pull request comment
-        if: success()
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const branchName = '${{ steps.branch.outputs.branch_name }}';
-            const baseBranch = '${{ github.event.workflow_run.head_branch }}';
-            const prUrl = `https://github.com/${context.repo.owner}/${context.repo.repo}/compare/${baseBranch}...${branchName}?quick_pull=1`;
-            
-            const issueNumber = ${{ github.event.workflow_run.pull_requests[0] && github.event.workflow_run.pull_requests[0].number || 'null' }};
-            
-            if (issueNumber) {
-              await github.rest.issues.createComment({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                issue_number: issueNumber,
-                body: `## 🤖 CI Auto-Fix Available\n\nClaude has analyzed the CI failures and prepared fixes.\n\n[**→ Create pull request to fix CI**](${prUrl})\n\n_This fix was generated automatically based on the [failed CI run](${{ fromJSON(steps.failure_details.outputs.result).runUrl }})._`
-              });
-            }

.github/workflows/claude-auto-review-test.yml

@@ -2,7 +2,7 @@ name: Auto review PRs
 
 on:
   pull_request:
-    types: [opened]
+    types: [opened, synchronize]
 
 jobs:
   auto-review:
@@ -18,16 +18,21 @@ jobs:
           fetch-depth: 1
 
       - name: Auto review PR
-        uses: anthropics/claude-code-action@v1-dev
+        uses: ./
         with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
           prompt: |
-            Please review this PR. Look at the changes and provide thoughtful feedback on:
+            Please review this PR and provide comprehensive feedback.
+            
+            Focus on:
             - Code quality and best practices
             - Potential bugs or issues
             - Suggestions for improvements
             - Overall architecture and design decisions
-            - Documentation consistency: Verify that README.md and other documentation files are updated to reflect any code changes (especially new inputs, features, or configuration options)
+            - Documentation consistency
             
-            Be constructive and specific in your feedback. Give inline comments where applicable.
+            Use the GitHub MCP tools to create a proper PR review with comments.
+            You can use mcp__github__create_pending_pull_request_review to start a review
+            and mcp__github__submit_pull_request_review to submit it as a COMMENT (not APPROVE).
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: "--allowedTools mcp__github-comment-server__create_pending_pull_request_review,mcp__github-comment-server__add_comment_to_pending_review,mcp__github-comment-server__submit_pending_pull_request_review,mcp__github-comment-server__get_pull_request_diff"
+          claude_args: "--allowedTools mcp__github__create_pending_pull_request_review,mcp__github__submit_pull_request_review,Read,Grep,Glob"

.github/workflows/claude-auto-review.yml

@@ -1,26 +0,0 @@
-name: Auto Review PRs
-
-on:
-  pull_request:
-    types: [opened, synchronize]
-
-jobs:
-  auto-review:
-    runs-on: ubuntu-latest
-    permissions:
-      contents: read
-      pull-requests: write
-      issues: write
-      id-token: write
-    
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-          
-      - name: Auto review PR
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          prompt: /review

.github/workflows/claude.yml

@@ -31,13 +31,9 @@ jobs:
 
       - name: Run Claude Code
         id: claude
-        uses: janeapp/claude-code-action@main
+        uses: anthropics/claude-code-action@beta
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           allowed_tools: "Bash(bun install),Bash(bun test:*),Bash(bun run format),Bash(bun typecheck)"
           custom_instructions: "You have also been granted tools for editing files and running bun commands (install, run, test, typecheck) for testing your changes: bun install, bun test, bun run format, bun typecheck."
           model: "claude-opus-4-1-20250805"
-          # Testing PR 411 - sticky comment customization
-          use_sticky_comment: true
-          sticky_comment_app_bot_id: "209825114"
-          sticky_comment_app_bot_name: "claude"

README.md

@@ -1,6 +1,6 @@
 ![Claude Code Action responding to a comment](https://github.com/user-attachments/assets/1d60c2e9-82ed-4ee5-b749-f9e021c85f4d)
 
-# Claude Code Action (Final Test)
+# Claude Code Action - No Approval Test
 
 A general-purpose [Claude Code](https://claude.ai/code) action for GitHub PRs and issues that can answer questions and implement code changes. This action listens for a trigger phrase in comments and activates Claude act on the request. It supports multiple authentication methods including Anthropic direct API, Amazon Bedrock, and Google Vertex AI.
 
@@ -57,3 +57,21 @@ Having issues or questions? Check out our [Frequently Asked Questions](./docs/fa
 ## License
 
 This project is licensed under the MIT License—see the LICENSE file for details.
+
+
+## Testing token fix
+
+
+## Testing token fix v2
+
+
+## Testing token fix v3
+
+
+## Testing review tools
+
+
+## Testing MCP server fix
+
+
+## Testing gh comment command

action.yml

@@ -81,10 +81,6 @@ inputs:
     description: "Enable commit signing using GitHub's commit signature verification. When false, Claude uses standard git commands"
     required: false
     default: "false"
-  allowed_tools:
-    description: "Comma-separated list of tools to allow Claude to use (e.g., 'Edit,MultiEdit,Write,Read'). If not set, mode defaults apply."
-    required: false
-    default: ""
   experimental_allowed_domains:
     description: "Restrict network access to these domains only (newline-separated). If not set, no restrictions are applied. Provider domains are auto-detected."
     required: false
@@ -134,7 +130,6 @@ runs:
         ADDITIONAL_PERMISSIONS: ${{ inputs.additional_permissions }}
         CLAUDE_ARGS: ${{ inputs.claude_args }}
         MCP_CONFIG: ${{ inputs.mcp_config }}
-        ALLOWED_TOOLS: ${{ inputs.allowed_tools }}
 
     - name: Install Base Action Dependencies
       if: steps.prepare.outputs.contains_trigger == 'true'

base-action/src/setup-claude-code-settings.ts

@@ -79,37 +79,4 @@ export async function setupClaudeCodeSettings(
       console.log(`Slash commands directory not found or error copying: ${e}`);
     }
   }
-
-  // Copy subagent files from repository to Claude's agents directory
-  // CLAUDE_WORKING_DIR is set by the action to point to the repo being processed
-  const workingDir = process.env.CLAUDE_WORKING_DIR || process.cwd();
-  const repoAgentsDir = `${workingDir}/.claude/agents`;
-  const targetAgentsDir = `${home}/.claude/agents`;
-  
-  try {
-    const agentsDirExists = await $`test -d ${repoAgentsDir}`.quiet().nothrow();
-    if (agentsDirExists.exitCode === 0) {
-      console.log(`Found subagents directory at ${repoAgentsDir}`);
-      
-      // Create target agents directory if it doesn't exist
-      await $`mkdir -p ${targetAgentsDir}`.quiet();
-      console.log(`Created target agents directory at ${targetAgentsDir}`);
-      
-      // Copy all .md files from repo agents to Claude's agents directory
-      const copyResult = await $`cp -r ${repoAgentsDir}/*.md ${targetAgentsDir}/ 2>/dev/null`.quiet().nothrow();
-      
-      if (copyResult.exitCode === 0) {
-        // List copied agents for logging
-        const agents = await $`ls -la ${targetAgentsDir}/*.md 2>/dev/null | wc -l`.quiet().text();
-        const agentCount = parseInt(agents.trim()) || 0;
-        console.log(`Successfully copied ${agentCount} subagent(s) to ${targetAgentsDir}`);
-      } else {
-        console.log(`No subagent files found in ${repoAgentsDir}`);
-      }
-    } else {
-      console.log(`No subagents directory found at ${repoAgentsDir}`);
-    }
-  } catch (e) {
-    console.log(`Error handling subagents: ${e}`);
-  }
 }

slash-commands/fix-ci-commit.md

@@ -1,54 +0,0 @@
----
-description: Fix CI failures and commit changes (for use when branch already exists)
-allowed_tools: "*"
----
-
-# Fix CI Failures and Commit
-
-You are on a branch that was created to fix CI failures. Your task is to fix the issues and commit the changes.
-
-## CI Failure Information
-
-$ARGUMENTS
-
-## Your Tasks
-
-1. **Analyze the failures** - Understand what went wrong from the logs
-2. **Fix the issues** - Make the necessary code changes
-3. **Commit your fixes** - Use git to commit all changes
-
-## Step-by-Step Instructions
-
-### 1. Fix the Issues
-
-Based on the error logs:
-- Fix syntax errors
-- Fix formatting issues  
-- Fix test failures
-- Fix any other CI problems
-
-### 2. Commit Your Changes (REQUIRED)
-
-After fixing ALL issues, you MUST:
-
-Use the `mcp__github_file_ops__commit_files` tool to commit all your changes with a descriptive message like:
-
-```
-Fix CI failures
-
-- Fixed syntax errors
-- Fixed formatting issues  
-- Fixed test failures
-[List actual fixes made]
-```
-
-**IMPORTANT**: You MUST use the MCP file ops tool to commit your changes. The workflow expects you to commit your changes.
-
-### 3. Verify (Optional)
-
-If possible, run verification commands:
-- `bun run format:check` for formatting
-- `bun test` for tests
-- `bun run typecheck` for TypeScript
-
-Begin by analyzing the failure logs and then fix the issues.

slash-commands/fix-ci.md

@@ -1,67 +0,0 @@
----
-description: Analyze and fix CI failures by examining logs and making targeted fixes
-allowed_tools: "*"
----
-
-# Fix CI Failures
-
-You are tasked with analyzing CI failure logs and fixing the issues. Follow these steps:
-
-## Context Provided
-
-$ARGUMENTS
-
-## Step 1: Analyze the Failure
-
-Parse the provided CI failure information to understand:
-- Which jobs failed and why
-- The specific error messages and stack traces
-- Whether failures are test-related, build-related, or linting issues
-
-## Step 2: Search and Understand the Codebase
-
-Use search tools to locate the failing code:
-- Search for the failing test names or functions
-- Find the source files mentioned in error messages
-- Review related configuration files (package.json, tsconfig.json, etc.)
-
-## Step 3: Apply Targeted Fixes
-
-Make minimal, focused changes:
-- **For test failures**: Determine if the test or implementation needs fixing
-- **For type errors**: Fix type definitions or correct the code logic
-- **For linting issues**: Apply formatting using the project's tools
-- **For build errors**: Resolve dependency or configuration issues
-- **For missing imports**: Add the necessary imports or install packages
-
-Requirements:
-- Only fix the actual CI failures, avoid unrelated changes
-- Follow existing code patterns and conventions
-- Ensure changes are production-ready, not temporary hacks
-- Preserve existing functionality while fixing issues
-
-## Step 4: Commit Changes
-
-After applying fixes:
-1. Use the `mcp__github_file_ops__commit_files` tool to commit your changes
-2. Include a descriptive commit message explaining what was fixed
-3. Document which CI jobs/tests were addressed in the commit message
-4. Important: Use the MCP file ops tool to commit your changes
-
-## Step 5: Verify Fixes Locally
-
-Run available verification commands:
-- Execute the failing tests locally to confirm they pass
-- Run the project's lint command (check package.json for scripts)
-- Run type checking if available
-- Execute any build commands to ensure compilation succeeds
-
-## Important Guidelines
-
-- Focus exclusively on fixing the reported CI failures
-- Maintain code quality and follow the project's established patterns
-- If a fix requires significant refactoring, document why it's necessary
-- When multiple solutions exist, choose the simplest one that maintains code quality
-- Add clear comments only if the fix is non-obvious
-
-Begin by analyzing the failure details provided above.

src/entrypoints/prepare.ts

@@ -56,6 +56,7 @@ async function run() {
       mode,
       githubToken,
     });
+    core.setOutput("GITHUB_TOKEN", githubToken);
 
     // MCP config is handled by individual modes (tag/agent) and included in their claude_args output
 

src/mcp/install-mcp-server.ts

@@ -111,10 +111,29 @@ export async function prepareMcpConfig(
       };
     }
 
-    // CI server is included when we have a workflow token and context is a PR
-    const hasWorkflowToken = !!process.env.DEFAULT_WORKFLOW_TOKEN;
+    // Include inline comment server for experimental review mode
+    if (context.inputs.mode === "experimental-review" && context.isPR) {
+      baseMcpConfig.mcpServers.github_inline_comment = {
+        command: "bun",
+        args: [
+          "run",
+          `${process.env.GITHUB_ACTION_PATH}/src/mcp/github-inline-comment-server.ts`,
+        ],
+        env: {
+          GITHUB_TOKEN: githubToken,
+          REPO_OWNER: owner,
+          REPO_NAME: repo,
+          PR_NUMBER: context.entityNumber?.toString() || "",
+          GITHUB_API_URL: GITHUB_API_URL,
+        },
+      };
+    }
 
-    if (context.isPR && hasWorkflowToken) {
+    // Only add CI server if we have actions:read permission and we're in a PR context
+    const hasActionsReadPermission =
+      context.inputs.additionalPermissions.get("actions") === "read";
+
+    if (context.isPR && hasActionsReadPermission) {
       // Verify the token actually has actions:read permission
       const actuallyHasPermission = await checkActionsReadPermission(
         process.env.DEFAULT_WORKFLOW_TOKEN || "",

src/modes/agent/index.ts

@@ -2,6 +2,16 @@ import * as core from "@actions/core";
 import { mkdir, writeFile } from "fs/promises";
 import type { Mode, ModeOptions, ModeResult } from "../types";
 import type { PreparedContext } from "../../create-prompt/types";
+import { GITHUB_API_URL, GITHUB_SERVER_URL } from "../../github/api/config";
+import { fetchGitHubData } from "../../github/data/fetcher";
+import { 
+  formatContext, 
+  formatBody, 
+  formatComments,
+  formatReviewComments,
+  formatChangedFilesWithSHA 
+} from "../../github/data/formatter";
+import { isEntityContext } from "../../github/context";
 
 /**
  * Agent mode implementation.
@@ -39,19 +49,64 @@ export const agentMode: Mode = {
     return false;
   },
 
-  async prepare({ context, githubToken }: ModeOptions): Promise<ModeResult> {
+  async prepare({ context, githubToken, octokit }: ModeOptions): Promise<ModeResult> {
     // Agent mode handles automation events and any event with explicit prompts
     
-    // TODO: handle by createPrompt (similar to tag and review modes)
+    console.log(`Agent mode: githubToken provided: ${!!githubToken}, length: ${githubToken?.length || 0}`);
+
     // Create prompt directory
     await mkdir(`${process.env.RUNNER_TEMP}/claude-prompts`, {
       recursive: true,
     });
-    // Write the prompt file - the base action requires a prompt_file parameter.
-    // Use the unified prompt field from v1.0.
-    const promptContent =
-      context.inputs.prompt ||
+    
+    // Fetch GitHub context data if we're in an entity context (PR/issue)
+    let githubContextPrefix = '';
+    if (isEntityContext(context)) {
+      try {
+        const githubData = await fetchGitHubData({
+          octokits: octokit,
+          repository: `${context.repository.owner}/${context.repository.repo}`,
+          prNumber: context.entityNumber.toString(),
+          isPR: context.isPR,
+          triggerUsername: context.actor,
+        });
+        
+        // Format the GitHub data into a readable context
+        const formattedContext = formatContext(githubData.contextData, context.isPR);
+        const formattedBody = githubData.contextData?.body 
+          ? formatBody(githubData.contextData.body, githubData.imageUrlMap)
+          : "No description provided";
+        const formattedComments = formatComments(githubData.comments, githubData.imageUrlMap);
+        
+        // Build the context prefix
+        githubContextPrefix = `## GitHub Context
+
+${formattedContext}
+
+### Description
+${formattedBody}`;
+        
+        if (formattedComments && formattedComments.trim()) {
+          githubContextPrefix += `\n\n### Comments\n${formattedComments}`;
+        }
+        
+        if (context.isPR && githubData.changedFilesWithSHA) {
+          const formattedFiles = formatChangedFilesWithSHA(githubData.changedFilesWithSHA);
+          githubContextPrefix += `\n\n### Changed Files\n${formattedFiles}`;
+        }
+        
+        githubContextPrefix += '\n\n## Your Task\n\n';
+      } catch (error) {
+        console.warn('Failed to fetch GitHub context:', error);
+        // Continue without GitHub context if fetching fails
+      }
+    }
+    
+    // Write the prompt file with GitHub context prefix
+    const userPrompt = context.inputs.prompt || 
       `Repository: ${context.repository.owner}/${context.repository.repo}`;
+    const promptContent = githubContextPrefix + userPrompt;
+    
     await writeFile(
       `${process.env.RUNNER_TEMP}/claude-prompts/claude-prompt.txt`,
       promptContent,
@@ -60,12 +115,12 @@ export const agentMode: Mode = {
     // Agent mode: User has full control via claudeArgs
     // No default tools are enforced - Claude Code's defaults will apply
 
-    // Always include the GitHub comment server in agent mode
-    // This ensures GitHub tools (PR reviews, comments, etc.) work out of the box
-    // without requiring users to manually configure the MCP server
+    // Include both GitHub comment server and main GitHub MCP server by default
+    // This ensures comprehensive GitHub tools work out of the box
     const mcpConfig: any = {
       mcpServers: {
-        "github-comment-server": {
+        // GitHub comment server for updating Claude comments
+        github_comment: {
           command: "bun",
           args: [
             "run",
@@ -75,33 +130,54 @@ export const agentMode: Mode = {
             GITHUB_TOKEN: githubToken || "",
             REPO_OWNER: context.repository.owner,
             REPO_NAME: context.repository.repo,
+            CLAUDE_COMMENT_ID: process.env.CLAUDE_COMMENT_ID || "",
+            PR_NUMBER: (context as any).entityNumber?.toString() || process.env.GITHUB_EVENT_PULL_REQUEST_NUMBER || "",
+            ISSUE_NUMBER: (context as any).entityNumber?.toString() || "",
             GITHUB_EVENT_NAME: process.env.GITHUB_EVENT_NAME || "",
             GITHUB_API_URL:
               process.env.GITHUB_API_URL || "https://api.github.com",
           },
         },
+        // Main GitHub MCP server for comprehensive GitHub operations
+        github: {
+          command: "docker",
+          args: [
+            "run",
+            "-i",
+            "--rm",
+            "-e",
+            "GITHUB_PERSONAL_ACCESS_TOKEN",
+            "-e",
+            "GITHUB_HOST",
+            "ghcr.io/github/github-mcp-server:sha-efef8ae", // https://github.com/github/github-mcp-server/releases/tag/v0.9.0
+          ],
+          env: {
+            GITHUB_PERSONAL_ACCESS_TOKEN: githubToken || "",
+            GITHUB_HOST: GITHUB_SERVER_URL,
+          },
+        },
       },
     };
     
-    // Add GitHub file ops server when using commit signing
-    if (context.inputs?.useCommitSigning) {
-      mcpConfig.mcpServers["github-file-ops-server"] = {
+    // Include inline comment server for PR contexts
+    if (context.eventName === "pull_request" || context.eventName === "pull_request_review") {
+      // Get PR number from the context payload
+      const prNumber = (context as any).payload?.pull_request?.number || 
+                      (context as any).entityNumber || 
+                      "";
+      
+      mcpConfig.mcpServers.github_inline_comment = {
         command: "bun",
         args: [
           "run",
-          `${process.env.GITHUB_ACTION_PATH}/src/mcp/github-file-ops-server.ts`,
+          `${process.env.GITHUB_ACTION_PATH}/src/mcp/github-inline-comment-server.ts`,
         ],
         env: {
           GITHUB_TOKEN: githubToken || "",
           REPO_OWNER: context.repository.owner,
           REPO_NAME: context.repository.repo,
-          BRANCH_NAME: "", // Agent mode doesn't pre-create branches
-          BASE_BRANCH: "",
-          REPO_DIR: process.env.GITHUB_WORKSPACE || process.cwd(),
-          GITHUB_EVENT_NAME: process.env.GITHUB_EVENT_NAME || "",
-          IS_PR: "false", // Agent mode doesn't create PRs by default
-          GITHUB_API_URL:
-            process.env.GITHUB_API_URL || "https://api.github.com",
+          PR_NUMBER: prNumber.toString(),
+          GITHUB_API_URL: process.env.GITHUB_API_URL || "https://api.github.com",
         },
       };
     }
@@ -124,23 +200,12 @@ export const agentMode: Mode = {
       }
     }
 
-    // Agent mode: pass through user's claude_args with MCP config and allowed_tools
+    // Agent mode: pass through user's claude_args with MCP config
     const userClaudeArgs = process.env.CLAUDE_ARGS || "";
-    const userAllowedTools = process.env.ALLOWED_TOOLS || "";
     const escapedMcpConfig = JSON.stringify(mcpConfig).replace(/'/g, "'\\''");
-    let claudeArgs = `--mcp-config '${escapedMcpConfig}'`;
-    
-    // Add allowed_tools if specified
-    if (userAllowedTools) {
-      claudeArgs += ` --allowedTools "${userAllowedTools}"`;
-    }
-    
-    // Add user's additional claude_args
-    if (userClaudeArgs) {
-      claudeArgs += ` ${userClaudeArgs}`;
-    }
-    
-    core.setOutput("claude_args", claudeArgs.trim());
+    const claudeArgs =
+      `--mcp-config '${escapedMcpConfig}' ${userClaudeArgs}`.trim();
+    core.setOutput("claude_args", claudeArgs);
 
     return {
       commentId: undefined,

test-failure.ts

@@ -1,13 +0,0 @@
-// This file intentionally has TypeScript errors to trigger CI failure
-// Testing auto-fix with MCP file ops enabled
-const testFunction = (param: string): number => {
-  // Type error: returning string instead of number
-  return "this should be a number";
-}
-
-// Syntax error: missing closing brace
-function brokenFunction() {
-  console.log("missing closing brace"
-}
-
-export { testFunction, brokenFunction };