Fix: Pass GitHub token to MCP servers in agent mode

The token was being obtained successfully but not outputted from the prepare step for use in later steps. Added explicit output of the GitHub token and debug logging.

.github/workflows/claude-auto-review-test.yml

@@ -18,9 +18,9 @@ jobs:
           fetch-depth: 1
 
       - name: Auto review PR
-        uses: anthropics/claude-code-action@main
+        uses: anthropics/claude-code-action@v1-dev
         with:
-          direct_prompt: |
+          prompt: |
             Please review this PR. Look at the changes and provide thoughtful feedback on:
             - Code quality and best practices
             - Potential bugs or issues
@@ -30,4 +30,4 @@ jobs:
 
             Be constructive and specific in your feedback. Give inline comments where applicable.
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          allowed_tools: "mcp__github__create_pending_pull_request_review,mcp__github__add_comment_to_pending_review,mcp__github__submit_pending_pull_request_review,mcp__github__get_pull_request_diff"
+          claude_args: "--allowedTools mcp__github-comment-server__create_pending_pull_request_review,mcp__github-comment-server__add_comment_to_pending_review,mcp__github-comment-server__submit_pending_pull_request_review,mcp__github-comment-server__get_pull_request_diff"

.github/workflows/claude.yml

@@ -31,9 +31,9 @@ jobs:
 
       - name: Run Claude Code
         id: claude
-        uses: anthropics/claude-code-action@v1
+        uses: anthropics/claude-code-action@beta
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: |
-            --allowedTools "Bash(bun install),Bash(bun test:*),Bash(bun run format),Bash(bun typecheck)"
-            --model "claude-opus-4-1-20250805"
+          allowed_tools: "Bash(bun install),Bash(bun test:*),Bash(bun run format),Bash(bun typecheck)"
+          custom_instructions: "You have also been granted tools for editing files and running bun commands (install, run, test, typecheck) for testing your changes: bun install, bun test, bun run format, bun typecheck."
+          model: "claude-opus-4-1-20250805"

.github/workflows/issue-triage.yml

@@ -97,12 +97,10 @@ jobs:
           EOF
 
       - name: Run Claude Code for Issue Triage
-        uses: anthropics/claude-code-base-action@v1
+        uses: anthropics/claude-code-base-action@beta
         with:
-          prompt: $(cat /tmp/claude-prompts/triage-prompt.txt)
+          prompt_file: /tmp/claude-prompts/triage-prompt.txt
+          allowed_tools: "Bash(gh label list),mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__update_issue,mcp__github__search_issues,mcp__github__list_issues"
+          mcp_config: /tmp/mcp-config/mcp-servers.json
+          timeout_minutes: "5"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: |
-            --allowedTools Bash(gh label list),mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__update_issue,mcp__github__search_issues,mcp__github__list_issues
-            --mcp-config /tmp/mcp-config/mcp-servers.json
-        env:
-          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/release.yml

@@ -80,7 +80,38 @@ jobs:
           gh release create "$next_version" \
             --title "$next_version" \
             --generate-notes \
-            --latest=false # keep v1 as latest
+            --latest=false # We want to keep beta as the latest
+
+  update-beta-tag:
+    needs: create-release
+    if: ${{ !inputs.dry_run }}
+    runs-on: ubuntu-latest
+    environment: production
+    permissions:
+      contents: write
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Update beta tag
+        run: |
+          # Get the latest version tag
+          VERSION=$(git tag -l 'v[0-9]*' | sort -V | tail -1)
+
+          # Update the beta tag to point to this release
+          git config user.name "github-actions[bot]"
+          git config user.email "github-actions[bot]@users.noreply.github.com"
+          git tag -fa beta -m "Update beta tag to ${VERSION}"
+          git push origin beta --force
+
+      - name: Update beta release to be latest
+        env:
+          GH_TOKEN: ${{ github.token }}
+        run: |
+          # Update beta release to be marked as latest
+          gh release edit beta --latest
 
   update-major-tag:
     needs: create-release

.github/workflows/test-base-action.yml

@@ -25,6 +25,7 @@ jobs:
           prompt: ${{ github.event.inputs.test_prompt || 'List the files in the current directory starting with "package"' }}
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           allowed_tools: "LS,Read"
+          timeout_minutes: "3"
 
       - name: Verify inline prompt output
         run: |
@@ -82,6 +83,7 @@ jobs:
           prompt_file: "test-prompt.txt"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           allowed_tools: "LS,Read"
+          timeout_minutes: "3"
 
       - name: Verify prompt file output
         run: |

.github/workflows/test-custom-executables.yml

@@ -1,89 +0,0 @@
-name: Test Custom Executables
-
-on:
-  push:
-    branches:
-      - main
-  pull_request:
-  workflow_dispatch:
-
-jobs:
-  test-custom-executables:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
-
-      - name: Install Bun manually
-        run: |
-          echo "Installing Bun..."
-          curl -fsSL https://bun.sh/install | bash
-          echo "Bun installed at: $HOME/.bun/bin/bun"
-
-          # Verify Bun installation
-          if [ -f "$HOME/.bun/bin/bun" ]; then
-            echo "✅ Bun executable found"
-            $HOME/.bun/bin/bun --version
-          else
-            echo "❌ Bun executable not found"
-            exit 1
-          fi
-
-      - name: Install Claude Code manually
-        run: |
-          echo "Installing Claude Code..."
-          curl -fsSL https://claude.ai/install.sh | bash -s latest
-          echo "Claude Code installed at: $HOME/.local/bin/claude"
-
-          # Verify Claude installation
-          if [ -f "$HOME/.local/bin/claude" ]; then
-            echo "✅ Claude executable found"
-            ls -la "$HOME/.local/bin/claude"
-          else
-            echo "❌ Claude executable not found"
-            exit 1
-          fi
-
-      - name: Test with both custom executables
-        id: custom-test
-        uses: ./base-action
-        with:
-          prompt: |
-            List the files in the current directory starting with "package"
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          path_to_claude_code_executable: /home/runner/.local/bin/claude
-          path_to_bun_executable: /home/runner/.bun/bin/bun
-          allowed_tools: "LS,Read"
-
-      - name: Verify custom executables worked
-        run: |
-          OUTPUT_FILE="${{ steps.custom-test.outputs.execution_file }}"
-          CONCLUSION="${{ steps.custom-test.outputs.conclusion }}"
-
-          echo "Conclusion: $CONCLUSION"
-          echo "Output file: $OUTPUT_FILE"
-
-          if [ "$CONCLUSION" = "success" ]; then
-            echo "✅ Action completed successfully with both custom executables"
-          else
-            echo "❌ Action failed with custom executables"
-            exit 1
-          fi
-
-          if [ -f "$OUTPUT_FILE" ] && [ -s "$OUTPUT_FILE" ]; then
-            echo "✅ Execution log file created successfully"
-            if jq . "$OUTPUT_FILE" > /dev/null 2>&1; then
-              echo "✅ Output is valid JSON"
-              # Verify the task was completed
-              if grep -q "package" "$OUTPUT_FILE"; then
-                echo "✅ Claude successfully listed package files"
-              else
-                echo "⚠️ Could not verify if package files were listed"
-              fi
-            else
-              echo "❌ Output is not valid JSON"
-              exit 1
-            fi
-          else
-            echo "❌ Execution log file not found or empty"
-            exit 1
-          fi

.github/workflows/test-settings.yml

@@ -26,6 +26,7 @@ jobs:
                 "allow": ["Bash(echo:*)"]
               }
             }
+          timeout_minutes: "2"
 
       - name: Verify echo worked
         run: |
@@ -75,6 +76,7 @@ jobs:
                 "deny": ["Bash(echo:*)"]
               }
             }
+          timeout_minutes: "2"
 
       - name: Verify echo was denied
         run: |
@@ -112,6 +114,7 @@ jobs:
             Use Bash to echo "Hello from settings file test"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           settings: "test-settings.json"
+          timeout_minutes: "2"
 
       - name: Verify echo worked
         run: |
@@ -166,6 +169,7 @@ jobs:
             Use Bash to echo "This should not work from file"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           settings: "test-settings.json"
+          timeout_minutes: "2"
 
       - name: Verify echo was denied
         run: |

.npmrc

@@ -0,0 +1,2 @@
+engine-strict=true
+registry=https://registry.npmjs.org/

README.md

@@ -1,12 +1,11 @@
 ![Claude Code Action responding to a comment](https://github.com/user-attachments/assets/1d60c2e9-82ed-4ee5-b749-f9e021c85f4d)
 
-# Claude Code Action
+# Claude Code Action - No Approval Test
 
-A general-purpose [Claude Code](https://claude.ai/code) action for GitHub PRs and issues that can answer questions and implement code changes. This action intelligently detects when to activate based on your workflow context—whether responding to @claude mentions, issue assignments, or executing automation tasks with explicit prompts. It supports multiple authentication methods including Anthropic direct API, Amazon Bedrock, and Google Vertex AI.
+A general-purpose [Claude Code](https://claude.ai/code) action for GitHub PRs and issues that can answer questions and implement code changes. This action listens for a trigger phrase in comments and activates Claude act on the request. It supports multiple authentication methods including Anthropic direct API, Amazon Bedrock, and Google Vertex AI.
 
 ## Features
 
-- 🎯 **Intelligent Mode Detection**: Automatically selects the appropriate execution mode based on your workflow context—no configuration needed
 - 🤖 **Interactive Code Assistant**: Claude can answer questions about code, architecture, and programming
 - 🔍 **Code Review**: Analyzes PR changes and suggests improvements
 - ✨ **Code Implementation**: Can implement simple fixes, refactoring, and even new features
@@ -14,11 +13,19 @@ A general-purpose [Claude Code](https://claude.ai/code) action for GitHub PRs an
 - 🛠️ **Flexible Tool Access**: Access to GitHub APIs and file operations (additional tools can be enabled via configuration)
 - 📋 **Progress Tracking**: Visual progress indicators with checkboxes that dynamically update as Claude completes tasks
 - 🏃 **Runs on Your Infrastructure**: The action executes entirely on your own GitHub runner (Anthropic API calls go to your chosen provider)
-- ⚙️ **Simplified Configuration**: Unified `prompt` and `claude_args` inputs provide clean, powerful configuration aligned with Claude Code SDK
 
-## 📦 Upgrading from v0.x?
+## ⚠️ **BREAKING CHANGES COMING IN v1.0** ⚠️
 
-**See our [Migration Guide](./docs/migration-guide.md)** for step-by-step instructions on updating your workflows to v1.0. The new version simplifies configuration while maintaining compatibility with most existing setups.
+**We're planning a major update that will significantly change how this action works.** The new version will:
+
+- ✨ Automatically select the appropriate mode (no more `mode` input)
+- 🔧 Simplify configuration with unified `prompt` and `claude_args`
+- 🚀 Align more closely with the Claude Code SDK capabilities
+- 💥 Remove multiple inputs like `direct_prompt`, `custom_instructions`, and others
+
+**[→ Read the full v1.0 roadmap and provide feedback](https://github.com/anthropics/claude-code-action/discussions/428)**
+
+---
 
 ## Quickstart
 
@@ -33,7 +40,6 @@ This command will guide you through setting up the GitHub app and required secre
 
 ## Documentation
 
-- **[Migration Guide](./docs/migration-guide.md)** - **⭐ Upgrading from v0.x to v1.0**
 - [Setup Guide](./docs/setup.md) - Manual setup, custom GitHub apps, and security best practices
 - [Usage Guide](./docs/usage.md) - Basic usage, workflow configuration, and input parameters
 - [Custom Automations](./docs/custom-automations.md) - Examples of automated workflows and custom prompts

action.yml

@@ -57,10 +57,18 @@ inputs:
     required: false
     default: "false"
 
+  timeout_minutes:
+    description: "Timeout in minutes for execution"
+    required: false
+    default: "30"
   claude_args:
     description: "Additional arguments to pass directly to Claude CLI"
     required: false
     default: ""
+  mcp_config:
+    description: "Additional MCP configuration (JSON string) that merges with built-in GitHub MCP servers"
+    required: false
+    default: ""
   additional_permissions:
     description: "Additional GitHub permissions to request (e.g., 'actions: read')"
     required: false
@@ -77,14 +85,6 @@ inputs:
     description: "Restrict network access to these domains only (newline-separated). If not set, no restrictions are applied. Provider domains are auto-detected."
     required: false
     default: ""
-  path_to_claude_code_executable:
-    description: "Optional path to a custom Claude Code executable. If provided, skips automatic installation and uses this executable instead. WARNING: Using an older version may cause problems if the action begins taking advantage of new Claude Code features. This input is typically not needed unless you're debugging something specific or have unique needs in your environment."
-    required: false
-    default: ""
-  path_to_bun_executable:
-    description: "Optional path to a custom Bun executable. If provided, skips automatic Bun installation and uses this executable instead. WARNING: Using an incompatible version may cause problems if the action requires specific Bun features. This input is typically not needed unless you're debugging something specific or have unique needs in your environment."
-    required: false
-    default: ""
 
 outputs:
   execution_file:
@@ -93,28 +93,15 @@ outputs:
   branch_name:
     description: "The branch created by Claude Code for this execution"
     value: ${{ steps.prepare.outputs.CLAUDE_BRANCH }}
-  github_token:
-    description: "The GitHub token used by the action (Claude App token if available)"
-    value: ${{ steps.prepare.outputs.github_token }}
 
 runs:
   using: "composite"
   steps:
     - name: Install Bun
-      if: inputs.path_to_bun_executable == ''
       uses: oven-sh/setup-bun@735343b667d3e6f658f44d0eca948eb6282f2b76 # https://github.com/oven-sh/setup-bun/releases/tag/v2.0.2
       with:
         bun-version: 1.2.11
 
-    - name: Setup Custom Bun Path
-      if: inputs.path_to_bun_executable != ''
-      shell: bash
-      run: |
-        echo "Using custom Bun executable: ${{ inputs.path_to_bun_executable }}"
-        # Add the directory containing the custom executable to PATH
-        BUN_DIR=$(dirname "${{ inputs.path_to_bun_executable }}")
-        echo "$BUN_DIR" >> "$GITHUB_PATH"
-
     - name: Install Dependencies
       shell: bash
       run: |
@@ -142,7 +129,7 @@ runs:
         USE_COMMIT_SIGNING: ${{ inputs.use_commit_signing }}
         ADDITIONAL_PERMISSIONS: ${{ inputs.additional_permissions }}
         CLAUDE_ARGS: ${{ inputs.claude_args }}
-        ALL_INPUTS: ${{ toJson(inputs) }}
+        MCP_CONFIG: ${{ inputs.mcp_config }}
 
     - name: Install Base Action Dependencies
       if: steps.prepare.outputs.contains_trigger == 'true'
@@ -153,18 +140,8 @@ runs:
         bun install
         echo "Base-action dependencies installed"
         cd -
-
-        # Install Claude Code if no custom executable is provided
-        if [ -z "${{ inputs.path_to_claude_code_executable }}" ]; then
-          echo "Installing Claude Code..."
-          curl -fsSL https://claude.ai/install.sh | bash -s 1.0.92
-          echo "$HOME/.local/bin" >> "$GITHUB_PATH"
-        else
-          echo "Using custom Claude Code executable: ${{ inputs.path_to_claude_code_executable }}"
-          # Add the directory containing the custom executable to PATH
-          CLAUDE_DIR=$(dirname "${{ inputs.path_to_claude_code_executable }}")
-          echo "$CLAUDE_DIR" >> "$GITHUB_PATH"
-        fi
+        # Install Claude Code globally
+        bun install -g @anthropic-ai/claude-code@1.0.72
 
     - name: Setup Network Restrictions
       if: steps.prepare.outputs.contains_trigger == 'true' && inputs.experimental_allowed_domains != ''
@@ -188,11 +165,9 @@ runs:
         CLAUDE_CODE_ACTION: "1"
         INPUT_PROMPT_FILE: ${{ runner.temp }}/claude-prompts/claude-prompt.txt
         INPUT_SETTINGS: ${{ inputs.settings }}
+        INPUT_TIMEOUT_MINUTES: ${{ inputs.timeout_minutes }}
         INPUT_CLAUDE_ARGS: ${{ steps.prepare.outputs.claude_args }}
         INPUT_EXPERIMENTAL_SLASH_COMMANDS_DIR: ${{ github.action_path }}/slash-commands
-        INPUT_ACTION_INPUTS_PRESENT: ${{ steps.prepare.outputs.action_inputs_present }}
-        INPUT_PATH_TO_CLAUDE_CODE_EXECUTABLE: ${{ inputs.path_to_claude_code_executable }}
-        INPUT_PATH_TO_BUN_EXECUTABLE: ${{ inputs.path_to_bun_executable }}
 
         # Model configuration
         GITHUB_TOKEN: ${{ steps.prepare.outputs.GITHUB_TOKEN }}
@@ -266,7 +241,7 @@ runs:
         fi
 
     - name: Revoke app token
-      if: always() && inputs.github_token == '' && steps.prepare.outputs.skipped_due_to_workflow_validation_mismatch != 'true'
+      if: always() && inputs.github_token == ''
       shell: bash
       run: |
         curl -L \

base-action/.npmrc

@@ -0,0 +1,2 @@
+engine-strict=true
+registry=https://registry.npmjs.org/

base-action/README.md

@@ -100,6 +100,7 @@ Add the following to your workflow file:
 | `model`                   | Model to use (provider-specific format required for Bedrock/Vertex)                               | No       | 'claude-4-0-sonnet-20250219' |
 | `anthropic_model`         | DEPRECATED: Use 'model' instead                                                                   | No       | 'claude-4-0-sonnet-20250219' |
 | `fallback_model`          | Enable automatic fallback to specified model when default model is overloaded                     | No       | ''                           |
+| `timeout_minutes`         | Timeout in minutes for Claude Code execution                                                      | No       | '10'                         |
 | `anthropic_api_key`       | Anthropic API key (required for direct Anthropic API)                                             | No       | ''                           |
 | `claude_code_oauth_token` | Claude Code OAuth token (alternative to anthropic_api_key)                                        | No       | ''                           |
 | `use_bedrock`             | Use Amazon Bedrock with OIDC authentication instead of direct Anthropic API                       | No       | 'false'                      |
@@ -319,6 +320,7 @@ You can combine MCP config with other inputs like allowed tools:
     prompt: "Access the custom MCP server and use its tools"
     mcp_config: "mcp-config.json"
     allowed_tools: "Bash(git:*),View,mcp__server-name__custom_tool"
+    timeout_minutes: "15"
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
 ```
 

base-action/action.yml

@@ -20,10 +20,17 @@ inputs:
     default: ""
 
   # Action settings
+  timeout_minutes:
+    description: "Timeout in minutes for Claude Code execution"
+    required: false
+    default: "10"
   claude_args:
     description: "Additional arguments to pass directly to Claude CLI (e.g., '--max-turns 3 --mcp-config /path/to/config.json')"
     required: false
     default: ""
+  experimental_slash_commands_dir:
+    description: "Experimental: Directory containing slash command files to install"
+    required: false
 
   # Authentication settings
   anthropic_api_key:
@@ -47,14 +54,6 @@ inputs:
     description: "Whether to use Node.js dependency caching (set to true only for Node.js projects with lock files)"
     required: false
     default: "false"
-  path_to_claude_code_executable:
-    description: "Optional path to a custom Claude Code executable. If provided, skips automatic installation and uses this executable instead. WARNING: Using an older version may cause problems if the action begins taking advantage of new Claude Code features. This input is typically not needed unless you're debugging something specific or have unique needs in your environment."
-    required: false
-    default: ""
-  path_to_bun_executable:
-    description: "Optional path to a custom Bun executable. If provided, skips automatic Bun installation and uses this executable instead. WARNING: Using an incompatible version may cause problems if the action requires specific Bun features. This input is typically not needed unless you're debugging something specific or have unique needs in your environment."
-    required: false
-    default: ""
 
 outputs:
   conclusion:
@@ -74,20 +73,10 @@ runs:
         cache: ${{ inputs.use_node_cache == 'true' && 'npm' || '' }}
 
     - name: Install Bun
-      if: inputs.path_to_bun_executable == ''
       uses: oven-sh/setup-bun@735343b667d3e6f658f44d0eca948eb6282f2b76 # https://github.com/oven-sh/setup-bun/releases/tag/v2.0.2
       with:
         bun-version: 1.2.11
 
-    - name: Setup Custom Bun Path
-      if: inputs.path_to_bun_executable != ''
-      shell: bash
-      run: |
-        echo "Using custom Bun executable: ${{ inputs.path_to_bun_executable }}"
-        # Add the directory containing the custom executable to PATH
-        BUN_DIR=$(dirname "${{ inputs.path_to_bun_executable }}")
-        echo "$BUN_DIR" >> "$GITHUB_PATH"
-
     - name: Install Dependencies
       shell: bash
       run: |
@@ -96,16 +85,7 @@ runs:
 
     - name: Install Claude Code
       shell: bash
-      run: |
-        if [ -z "${{ inputs.path_to_claude_code_executable }}" ]; then
-          echo "Installing Claude Code..."
-          curl -fsSL https://claude.ai/install.sh | bash -s 1.0.92
-        else
-          echo "Using custom Claude Code executable: ${{ inputs.path_to_claude_code_executable }}"
-          # Add the directory containing the custom executable to PATH
-          CLAUDE_DIR=$(dirname "${{ inputs.path_to_claude_code_executable }}")
-          echo "$CLAUDE_DIR" >> "$GITHUB_PATH"
-        fi
+      run: bun install -g @anthropic-ai/claude-code@1.0.72
 
     - name: Run Claude Code Action
       shell: bash
@@ -123,9 +103,9 @@ runs:
         INPUT_PROMPT: ${{ inputs.prompt }}
         INPUT_PROMPT_FILE: ${{ inputs.prompt_file }}
         INPUT_SETTINGS: ${{ inputs.settings }}
+        INPUT_TIMEOUT_MINUTES: ${{ inputs.timeout_minutes }}
         INPUT_CLAUDE_ARGS: ${{ inputs.claude_args }}
-        INPUT_PATH_TO_CLAUDE_CODE_EXECUTABLE: ${{ inputs.path_to_claude_code_executable }}
-        INPUT_PATH_TO_BUN_EXECUTABLE: ${{ inputs.path_to_bun_executable }}
+        INPUT_EXPERIMENTAL_SLASH_COMMANDS_DIR: ${{ inputs.experimental_slash_commands_dir }}
 
         # Provider configuration
         ANTHROPIC_API_KEY: ${{ inputs.anthropic_api_key }}

base-action/examples/issue-triage.yml

@@ -103,6 +103,6 @@ jobs:
         with:
           prompt_file: /tmp/claude-prompts/triage-prompt.txt
           allowed_tools: "Bash(gh label list),mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__update_issue,mcp__github__search_issues,mcp__github__list_issues"
-          claude_args: |
-            --mcp-config /tmp/mcp-config/mcp-servers.json
+          mcp_config: /tmp/mcp-config/mcp-servers.json
+          timeout_minutes: "5"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}

base-action/src/index.ts

@@ -13,6 +13,7 @@ async function run() {
     await setupClaudeCodeSettings(
       process.env.INPUT_SETTINGS,
       undefined, // homeDir
+      process.env.INPUT_EXPERIMENTAL_SLASH_COMMANDS_DIR,
     );
 
     const promptConfig = await preparePrompt({
@@ -21,18 +22,8 @@ async function run() {
     });
 
     await runClaude(promptConfig.path, {
+      timeoutMinutes: process.env.INPUT_TIMEOUT_MINUTES,
       claudeArgs: process.env.INPUT_CLAUDE_ARGS,
-      allowedTools: process.env.INPUT_ALLOWED_TOOLS,
-      disallowedTools: process.env.INPUT_DISALLOWED_TOOLS,
-      maxTurns: process.env.INPUT_MAX_TURNS,
-      mcpConfig: process.env.INPUT_MCP_CONFIG,
-      systemPrompt: process.env.INPUT_SYSTEM_PROMPT,
-      appendSystemPrompt: process.env.INPUT_APPEND_SYSTEM_PROMPT,
-      claudeEnv: process.env.INPUT_CLAUDE_ENV,
-      fallbackModel: process.env.INPUT_FALLBACK_MODEL,
-      model: process.env.ANTHROPIC_MODEL,
-      pathToClaudeCodeExecutable:
-        process.env.INPUT_PATH_TO_CLAUDE_CODE_EXECUTABLE,
     });
   } catch (error) {
     core.setFailed(`Action failed with error: ${error}`);

base-action/src/run-claude.ts

@@ -13,17 +13,8 @@ const EXECUTION_FILE = `${process.env.RUNNER_TEMP}/claude-execution-output.json`
 const BASE_ARGS = ["--verbose", "--output-format", "stream-json"];
 
 export type ClaudeOptions = {
+  timeoutMinutes?: string;
   claudeArgs?: string;
-  model?: string;
-  pathToClaudeCodeExecutable?: string;
-  allowedTools?: string;
-  disallowedTools?: string;
-  maxTurns?: string;
-  mcpConfig?: string;
-  systemPrompt?: string;
-  appendSystemPrompt?: string;
-  claudeEnv?: string;
-  fallbackModel?: string;
 };
 
 type PreparedConfig = {
@@ -55,16 +46,20 @@ export function prepareRunConfig(
   // BASE_ARGS are always appended last (cannot be overridden)
   claudeArgs.push(...BASE_ARGS);
 
-  const customEnv: Record<string, string> = {};
-
-  if (process.env.INPUT_ACTION_INPUTS_PRESENT) {
-    customEnv.GITHUB_ACTION_INPUTS = process.env.INPUT_ACTION_INPUTS_PRESENT;
+  // Validate timeout if provided (affects process wrapper, not Claude)
+  if (options.timeoutMinutes) {
+    const timeoutMinutesNum = parseInt(options.timeoutMinutes, 10);
+    if (isNaN(timeoutMinutesNum) || timeoutMinutesNum <= 0) {
+      throw new Error(
+        `timeoutMinutes must be a positive number, got: ${options.timeoutMinutes}`,
+      );
+    }
   }
 
   return {
     claudeArgs,
     promptPath,
-    env: customEnv,
+    env: {},
   };
 }
 
@@ -93,11 +88,9 @@ export async function runClaude(promptPath: string, options: ClaudeOptions) {
   console.log(`Prompt file size: ${promptSize} bytes`);
 
   // Log custom environment variables if any
-  const customEnvKeys = Object.keys(config.env).filter(
-    (key) => key !== "CLAUDE_ACTION_INPUTS_PRESENT",
-  );
-  if (customEnvKeys.length > 0) {
-    console.log(`Custom environment variables: ${customEnvKeys.join(", ")}`);
+  if (Object.keys(config.env).length > 0) {
+    const envKeys = Object.keys(config.env).join(", ");
+    console.log(`Custom environment variables: ${envKeys}`);
   }
 
   // Log custom arguments if any
@@ -121,10 +114,7 @@ export async function runClaude(promptPath: string, options: ClaudeOptions) {
     pipeStream.destroy();
   });
 
-  // Use custom executable path if provided, otherwise default to "claude"
-  const claudeExecutable = options.pathToClaudeCodeExecutable || "claude";
-
-  const claudeProcess = spawn(claudeExecutable, config.claudeArgs, {
+  const claudeProcess = spawn("claude", config.claudeArgs, {
     stdio: ["pipe", "pipe", "inherit"],
     env: {
       ...process.env,
@@ -183,15 +173,57 @@ export async function runClaude(promptPath: string, options: ClaudeOptions) {
     claudeProcess.kill("SIGTERM");
   });
 
-  // Wait for Claude to finish
+  // Wait for Claude to finish with timeout
+  let timeoutMs = 10 * 60 * 1000; // Default 10 minutes
+  if (options.timeoutMinutes) {
+    timeoutMs = parseInt(options.timeoutMinutes, 10) * 60 * 1000;
+  } else if (process.env.INPUT_TIMEOUT_MINUTES) {
+    const envTimeout = parseInt(process.env.INPUT_TIMEOUT_MINUTES, 10);
+    if (isNaN(envTimeout) || envTimeout <= 0) {
+      throw new Error(
+        `INPUT_TIMEOUT_MINUTES must be a positive number, got: ${process.env.INPUT_TIMEOUT_MINUTES}`,
+      );
+    }
+    timeoutMs = envTimeout * 60 * 1000;
+  }
   const exitCode = await new Promise<number>((resolve) => {
+    let resolved = false;
+
+    // Set a timeout for the process
+    const timeoutId = setTimeout(() => {
+      if (!resolved) {
+        console.error(
+          `Claude process timed out after ${timeoutMs / 1000} seconds`,
+        );
+        claudeProcess.kill("SIGTERM");
+        // Give it 5 seconds to terminate gracefully, then force kill
+        setTimeout(() => {
+          try {
+            claudeProcess.kill("SIGKILL");
+          } catch (e) {
+            // Process may already be dead
+          }
+        }, 5000);
+        resolved = true;
+        resolve(124); // Standard timeout exit code
+      }
+    }, timeoutMs);
+
     claudeProcess.on("close", (code) => {
-      resolve(code || 0);
+      if (!resolved) {
+        clearTimeout(timeoutId);
+        resolved = true;
+        resolve(code || 0);
+      }
     });
 
     claudeProcess.on("error", (error) => {
-      console.error("Claude process error:", error);
-      resolve(1);
+      if (!resolved) {
+        console.error("Claude process error:", error);
+        clearTimeout(timeoutId);
+        resolved = true;
+        resolve(1);
+      }
     });
   });
 
@@ -221,10 +253,7 @@ export async function runClaude(promptPath: string, options: ClaudeOptions) {
       await writeFile("output.txt", output);
 
       // Process output.txt into JSON and save to execution file
-      // Increase maxBuffer from Node.js default of 1MB to 10MB to handle large Claude outputs
-      const { stdout: jsonOutput } = await execAsync("jq -s '.' output.txt", {
-        maxBuffer: 10 * 1024 * 1024,
-      });
+      const { stdout: jsonOutput } = await execAsync("jq -s '.' output.txt");
       await writeFile(EXECUTION_FILE, jsonOutput);
 
       console.log(`Log saved to ${EXECUTION_FILE}`);
@@ -241,10 +270,7 @@ export async function runClaude(promptPath: string, options: ClaudeOptions) {
     if (output) {
       try {
         await writeFile("output.txt", output);
-        // Increase maxBuffer from Node.js default of 1MB to 10MB to handle large Claude outputs
-        const { stdout: jsonOutput } = await execAsync("jq -s '.' output.txt", {
-          maxBuffer: 10 * 1024 * 1024,
-        });
+        const { stdout: jsonOutput } = await execAsync("jq -s '.' output.txt");
         await writeFile(EXECUTION_FILE, jsonOutput);
         core.setOutput("execution_file", EXECUTION_FILE);
       } catch (e) {

base-action/src/setup-claude-code-settings.ts

@@ -5,6 +5,7 @@ import { readFile } from "fs/promises";
 export async function setupClaudeCodeSettings(
   settingsInput?: string,
   homeDir?: string,
+  slashCommandsDir?: string,
 ) {
   const home = homeDir ?? homedir();
   const settingsPath = `${home}/.claude/settings.json`;
@@ -65,4 +66,17 @@ export async function setupClaudeCodeSettings(
 
   await $`echo ${JSON.stringify(settings, null, 2)} > ${settingsPath}`.quiet();
   console.log(`Settings saved successfully`);
+
+  if (slashCommandsDir) {
+    console.log(
+      `Copying slash commands from ${slashCommandsDir} to ${home}/.claude/`,
+    );
+    try {
+      await $`test -d ${slashCommandsDir}`.quiet();
+      await $`cp ${slashCommandsDir}/*.md ${home}/.claude/ 2>/dev/null || true`.quiet();
+      console.log(`Slash commands copied successfully`);
+    } catch (e) {
+      console.log(`Slash commands directory not found or error copying: ${e}`);
+    }
+  }
 }

base-action/test/run-claude.test.ts

@@ -30,6 +30,36 @@ describe("prepareRunConfig", () => {
     expect(prepared.promptPath).toBe("/custom/prompt/path.txt");
   });
 
+  describe("timeoutMinutes validation", () => {
+    test("should accept valid timeoutMinutes value", () => {
+      const options: ClaudeOptions = { timeoutMinutes: "15" };
+      expect(() =>
+        prepareRunConfig("/tmp/test-prompt.txt", options),
+      ).not.toThrow();
+    });
+
+    test("should throw error for non-numeric timeoutMinutes", () => {
+      const options: ClaudeOptions = { timeoutMinutes: "abc" };
+      expect(() => prepareRunConfig("/tmp/test-prompt.txt", options)).toThrow(
+        "timeoutMinutes must be a positive number, got: abc",
+      );
+    });
+
+    test("should throw error for negative timeoutMinutes", () => {
+      const options: ClaudeOptions = { timeoutMinutes: "-5" };
+      expect(() => prepareRunConfig("/tmp/test-prompt.txt", options)).toThrow(
+        "timeoutMinutes must be a positive number, got: -5",
+      );
+    });
+
+    test("should throw error for zero timeoutMinutes", () => {
+      const options: ClaudeOptions = { timeoutMinutes: "0" };
+      expect(() => prepareRunConfig("/tmp/test-prompt.txt", options)).toThrow(
+        "timeoutMinutes must be a positive number, got: 0",
+      );
+    });
+  });
+
   describe("claudeArgs handling", () => {
     test("should parse and include custom claude arguments", () => {
       const options: ClaudeOptions = {

base-action/test/setup-claude-code-settings.test.ts

@@ -3,7 +3,7 @@
 import { describe, test, expect, beforeEach, afterEach } from "bun:test";
 import { setupClaudeCodeSettings } from "../src/setup-claude-code-settings";
 import { tmpdir } from "os";
-import { mkdir, writeFile, readFile, rm } from "fs/promises";
+import { mkdir, writeFile, readFile, rm, readdir } from "fs/promises";
 import { join } from "path";
 
 const testHomeDir = join(
@@ -147,4 +147,72 @@ describe("setupClaudeCodeSettings", () => {
     expect(settings.newKey).toBe("newValue");
     expect(settings.model).toBe("claude-opus-4-1-20250805");
   });
+
+  test("should copy slash commands to .claude directory when path provided", async () => {
+    const testSlashCommandsDir = join(testHomeDir, "test-slash-commands");
+    await mkdir(testSlashCommandsDir, { recursive: true });
+    await writeFile(
+      join(testSlashCommandsDir, "test-command.md"),
+      "---\ndescription: Test command\n---\nTest content",
+    );
+
+    await setupClaudeCodeSettings(undefined, testHomeDir, testSlashCommandsDir);
+
+    const testCommandPath = join(testHomeDir, ".claude", "test-command.md");
+    const content = await readFile(testCommandPath, "utf-8");
+    expect(content).toContain("Test content");
+  });
+
+  test("should skip slash commands when no directory provided", async () => {
+    await setupClaudeCodeSettings(undefined, testHomeDir);
+
+    const settingsContent = await readFile(settingsPath, "utf-8");
+    const settings = JSON.parse(settingsContent);
+    expect(settings.enableAllProjectMcpServers).toBe(true);
+  });
+
+  test("should handle missing slash commands directory gracefully", async () => {
+    const nonExistentDir = join(testHomeDir, "non-existent");
+
+    await setupClaudeCodeSettings(undefined, testHomeDir, nonExistentDir);
+
+    const settingsContent = await readFile(settingsPath, "utf-8");
+    expect(JSON.parse(settingsContent).enableAllProjectMcpServers).toBe(true);
+  });
+
+  test("should skip non-.md files in slash commands directory", async () => {
+    const testSlashCommandsDir = join(testHomeDir, "test-slash-commands");
+    await mkdir(testSlashCommandsDir, { recursive: true });
+    await writeFile(join(testSlashCommandsDir, "not-markdown.txt"), "ignored");
+    await writeFile(join(testSlashCommandsDir, "valid.md"), "copied");
+    await writeFile(join(testSlashCommandsDir, "another.md"), "also copied");
+
+    await setupClaudeCodeSettings(undefined, testHomeDir, testSlashCommandsDir);
+
+    const copiedFiles = await readdir(join(testHomeDir, ".claude"));
+    expect(copiedFiles).toContain("valid.md");
+    expect(copiedFiles).toContain("another.md");
+    expect(copiedFiles).not.toContain("not-markdown.txt");
+    expect(copiedFiles).toContain("settings.json"); // Settings should also exist
+  });
+
+  test("should handle slash commands path that is a file not directory", async () => {
+    const testFile = join(testHomeDir, "not-a-directory.txt");
+    await writeFile(testFile, "This is a file, not a directory");
+
+    await setupClaudeCodeSettings(undefined, testHomeDir, testFile);
+
+    const settingsContent = await readFile(settingsPath, "utf-8");
+    expect(JSON.parse(settingsContent).enableAllProjectMcpServers).toBe(true);
+  });
+
+  test("should handle empty slash commands directory", async () => {
+    const emptyDir = join(testHomeDir, "empty-slash-commands");
+    await mkdir(emptyDir, { recursive: true });
+
+    await setupClaudeCodeSettings(undefined, testHomeDir, emptyDir);
+
+    const settingsContent = await readFile(settingsPath, "utf-8");
+    expect(JSON.parse(settingsContent).enableAllProjectMcpServers).toBe(true);
+  });
 });

docs/cloud-providers.md

@@ -20,25 +20,23 @@ Use provider-specific model names based on your chosen provider:
 
 ```yaml
 # For direct Anthropic API (default)
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
     # ... other inputs
 
 # For Amazon Bedrock with OIDC
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
+    model: "anthropic.claude-3-7-sonnet-20250219-beta:0" # Cross-region inference
     use_bedrock: "true"
-    claude_args: |
-      --model anthropic.claude-4-0-sonnet-20250805-v1:0
     # ... other inputs
 
 # For Google Vertex AI with OIDC
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
+    model: "claude-3-7-sonnet@20250219"
     use_vertex: "true"
-    claude_args: |
-      --model claude-4-0-sonnet@20250805
     # ... other inputs
 ```
 
@@ -61,11 +59,10 @@ Both AWS Bedrock and GCP Vertex AI require OIDC authentication.
     app-id: ${{ secrets.APP_ID }}
     private-key: ${{ secrets.APP_PRIVATE_KEY }}
 
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
+    model: "anthropic.claude-3-7-sonnet-20250219-beta:0"
     use_bedrock: "true"
-    claude_args: |
-      --model anthropic.claude-4-0-sonnet-20250805-v1:0
     # ... other inputs
 
   permissions:
@@ -87,11 +84,10 @@ Both AWS Bedrock and GCP Vertex AI require OIDC authentication.
     app-id: ${{ secrets.APP_ID }}
     private-key: ${{ secrets.APP_PRIVATE_KEY }}
 
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
+    model: "claude-3-7-sonnet@20250219"
     use_vertex: "true"
-    claude_args: |
-      --model claude-4-0-sonnet@20250805
     # ... other inputs
 
   permissions:

docs/configuration.md

@@ -2,47 +2,51 @@
 
 ## Using Custom MCP Configuration
 
-You can add custom MCP (Model Context Protocol) servers to extend Claude's capabilities using the `--mcp-config` flag in `claude_args`. These servers merge with the built-in GitHub MCP servers.
+The `mcp_config` input allows you to add custom MCP (Model Context Protocol) servers to extend Claude's capabilities. These servers merge with the built-in GitHub MCP servers.
 
 ### Basic Example: Adding a Sequential Thinking Server
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --mcp-config '{"mcpServers": {"sequential-thinking": {"command": "npx", "args": ["-y", "@modelcontextprotocol/server-sequential-thinking"]}}}'
-      --allowedTools mcp__sequential-thinking__sequentialthinking
+    mcp_config: |
+      {
+        "mcpServers": {
+          "sequential-thinking": {
+            "command": "npx",
+            "args": [
+              "-y",
+              "@modelcontextprotocol/server-sequential-thinking"
+            ]
+          }
+        }
+      }
+    allowed_tools: "mcp__sequential-thinking__sequentialthinking" # Important: Each MCP tool from your server must be listed here, comma-separated
     # ... other inputs
 ```
 
 ### Passing Secrets to MCP Servers
 
-For MCP servers that require sensitive information like API keys or tokens, you can create a configuration file with GitHub Secrets:
+For MCP servers that require sensitive information like API keys or tokens, use GitHub Secrets in the environment variables:
 
 ```yaml
-- name: Create MCP Config
-  run: |
-    cat > /tmp/mcp-config.json << 'EOF'
-    {
-      "mcpServers": {
-        "custom-api-server": {
-          "command": "npx",
-          "args": ["-y", "@example/api-server"],
-          "env": {
-            "API_KEY": "${{ secrets.CUSTOM_API_KEY }}",
-            "BASE_URL": "https://api.example.com"
+- uses: anthropics/claude-code-action@beta
+  with:
+    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+    mcp_config: |
+      {
+        "mcpServers": {
+          "custom-api-server": {
+            "command": "npx",
+            "args": ["-y", "@example/api-server"],
+            "env": {
+              "API_KEY": "${{ secrets.CUSTOM_API_KEY }}",
+              "BASE_URL": "https://api.example.com"
+            }
           }
         }
       }
-    }
-    EOF
-
-- uses: anthropics/claude-code-action@v1
-  with:
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --mcp-config /tmp/mcp-config.json
     # ... other inputs
 ```
 
@@ -51,31 +55,25 @@ For MCP servers that require sensitive information like API keys or tokens, you
 For Python-based MCP servers managed with `uv`, you need to specify the directory containing your server:
 
 ```yaml
-- name: Create MCP Config for Python Server
-  run: |
-    cat > /tmp/mcp-config.json << 'EOF'
-    {
-      "mcpServers": {
-        "my-python-server": {
-          "type": "stdio",
-          "command": "uv",
-          "args": [
-            "--directory",
-            "${{ github.workspace }}/path/to/server/",
-            "run",
-            "server_file.py"
-          ]
-        }
-      }
-    }
-    EOF
-
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --mcp-config /tmp/mcp-config.json
-      --allowedTools my-python-server__<tool_name>  # Replace <tool_name> with your server's tool names
+    mcp_config: |
+      {
+        "mcpServers": {
+          "my-python-server": {
+            "type": "stdio",
+            "command": "uv",
+            "args": [
+              "--directory",
+              "${{ github.workspace }}/path/to/server/",
+              "run",
+              "server_file.py"
+            ]
+          }
+        }
+      }
+    allowed_tools: "my-python-server__<tool_name>" # Replace <tool_name> with your server's tool names
     # ... other inputs
 ```
 
@@ -86,26 +84,10 @@ For example, if your Python MCP server is at `mcp_servers/weather.py`, you would
   ["--directory", "${{ github.workspace }}/mcp_servers/", "run", "weather.py"]
 ```
 
-### Multiple MCP Servers
-
-You can add multiple MCP servers by using multiple `--mcp-config` flags:
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --mcp-config /tmp/config1.json
-      --mcp-config /tmp/config2.json
-      --mcp-config '{"mcpServers": {"inline-server": {"command": "npx", "args": ["@example/server"]}}}'
-    # ... other inputs
-```
-
 **Important**:
 
 - Always use GitHub Secrets (`${{ secrets.SECRET_NAME }}`) for sensitive values like API keys, tokens, or passwords. Never hardcode secrets directly in the workflow file.
 - Your custom servers will override any built-in servers with the same name.
-- The `claude_args` supports multiple `--mcp-config` flags that will be merged together.
 
 ## Additional Permissions for CI/CD Integration
 
@@ -178,38 +160,33 @@ jobs:
 
 ## Custom Environment Variables
 
-You can pass custom environment variables to Claude Code execution using the `settings` input. This is useful for CI/test setups that require specific environment variables:
+You can pass custom environment variables to Claude Code execution using the `claude_env` input. This is useful for CI/test setups that require specific environment variables:
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
-    settings: |
-      {
-        "env": {
-          "NODE_ENV": "test",
-          "CI": "true",
-          "DATABASE_URL": "postgres://test:test@localhost:5432/test_db"
-        }
-      }
+    claude_env: |
+      NODE_ENV: test
+      CI: true
+      DATABASE_URL: postgres://test:test@localhost:5432/test_db
     # ... other inputs
 ```
 
-These environment variables will be available to Claude Code during execution, allowing it to run tests, build processes, or other commands that depend on specific environment configurations.
+The `claude_env` input accepts YAML format where each line defines a key-value pair. These environment variables will be available to Claude Code during execution, allowing it to run tests, build processes, or other commands that depend on specific environment configurations.
 
 ## Limiting Conversation Turns
 
-You can limit the number of back-and-forth exchanges Claude can have during task execution using the `claude_args` input. This is useful for:
+You can use the `max_turns` parameter to limit the number of back-and-forth exchanges Claude can have during task execution. This is useful for:
 
 - Controlling costs by preventing runaway conversations
 - Setting time boundaries for automated workflows
 - Ensuring predictable behavior in CI/CD pipelines
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --max-turns 5  # Limit to 5 conversation turns
+    max_turns: "5" # Limit to 5 conversation turns
     # ... other inputs
 ```
 
@@ -223,50 +200,28 @@ By default, Claude only has access to:
 - Comment management (creating/updating comments)
 - Basic GitHub operations
 
-Claude does **not** have access to execute arbitrary Bash commands by default. If you want Claude to run specific commands (e.g., npm install, npm test), you must explicitly allow them using the `claude_args` configuration:
+Claude does **not** have access to execute arbitrary Bash commands by default. If you want Claude to run specific commands (e.g., npm install, npm test), you must explicitly allow them using the `allowed_tools` configuration:
 
-**Note**: If your repository has a `.mcp.json` file in the root directory, Claude will automatically detect and use the MCP server tools defined there. However, these tools still need to be explicitly allowed.
+**Note**: If your repository has a `.mcp.json` file in the root directory, Claude will automatically detect and use the MCP server tools defined there. However, these tools still need to be explicitly allowed via the `allowed_tools` configuration.
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
-    claude_args: |
-      --allowedTools "Bash(npm install),Bash(npm run test),Edit,Replace,NotebookEditCell"
-      --disallowedTools "TaskOutput,KillTask"
+    allowed_tools: "Bash(npm install),Bash(npm run test),Edit,Replace,NotebookEditCell"
+    disallowed_tools: "TaskOutput,KillTask"
     # ... other inputs
 ```
 
-**Note**: The base GitHub tools are always included. Use `--allowedTools` to add additional tools (including specific Bash commands), and `--disallowedTools` to prevent specific tools from being used.
+**Note**: The base GitHub tools are always included. Use `allowed_tools` to add additional tools (including specific Bash commands), and `disallowed_tools` to prevent specific tools from being used.
 
 ## Custom Model
 
-Specify a Claude model using `claude_args`:
+Use a specific Claude model:
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
-    claude_args: |
-      --model claude-4-0-sonnet-20250805
-    # ... other inputs
-```
-
-For provider-specific models:
-
-```yaml
-# AWS Bedrock
-- uses: anthropics/claude-code-action@v1
-  with:
-    use_bedrock: "true"
-    claude_args: |
-      --model anthropic.claude-4-0-sonnet-20250805-v1:0
-    # ... other inputs
-
-# Google Vertex AI
-- uses: anthropics/claude-code-action@v1
-  with:
-    use_vertex: "true"
-    claude_args: |
-      --model claude-4-0-sonnet@20250805
+    # model: "claude-3-5-sonnet-20241022"  # Optional: specify a different model
     # ... other inputs
 ```
 
@@ -277,7 +232,7 @@ You can provide Claude Code settings to customize behavior such as model selecti
 ### Option 1: Settings File
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     settings: "path/to/settings.json"
     # ... other inputs
@@ -286,7 +241,7 @@ You can provide Claude Code settings to customize behavior such as model selecti
 ### Option 2: Inline Settings
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     settings: |
       {
@@ -325,21 +280,6 @@ For a complete list of available settings and their descriptions, see the [Claud
 **Notes**:
 
 - The `enableAllProjectMcpServers` setting is always set to `true` by this action to ensure MCP servers work correctly.
-- The `claude_args` input provides direct access to Claude Code CLI arguments and takes precedence over settings.
-- We recommend using `claude_args` for simple configurations and `settings` for complex configurations with hooks and environment variables.
-
-## Migration from Deprecated Inputs
-
-Many individual input parameters have been consolidated into `claude_args` or `settings`. Here's how to migrate:
-
-| Old Input             | New Approach                                             |
-| --------------------- | -------------------------------------------------------- |
-| `allowed_tools`       | Use `claude_args: "--allowedTools Tool1,Tool2"`          |
-| `disallowed_tools`    | Use `claude_args: "--disallowedTools Tool1,Tool2"`       |
-| `max_turns`           | Use `claude_args: "--max-turns 10"`                      |
-| `model`               | Use `claude_args: "--model claude-4-0-sonnet-20250805"`  |
-| `claude_env`          | Use `settings` with `"env"` object                       |
-| `custom_instructions` | Use `claude_args: "--system-prompt 'Your instructions'"` |
-| `mcp_config`          | Use `claude_args: "--mcp-config '{...}'"`                |
-| `direct_prompt`       | Use `prompt` input instead                               |
-| `override_prompt`     | Use `prompt` with GitHub context variables               |
+- If both the `model` input parameter and a `model` in settings are provided, the `model` input parameter takes precedence.
+- The `allowed_tools` and `disallowed_tools` input parameters take precedence over `permissions` in settings.
+- In a future version, we may deprecate individual input parameters in favor of using the settings file for all configuration.

docs/custom-automations.md

@@ -1,6 +1,6 @@
 # Custom Automations
 
-These examples show how to configure Claude to act automatically based on GitHub events. When you provide a `prompt` input, the action automatically runs in agent mode without requiring manual @mentions. Without a `prompt`, it runs in interactive mode, responding to @claude mentions.
+These examples show how to configure Claude to act automatically based on GitHub events, without requiring manual @mentions.
 
 ## Supported GitHub Events
 
@@ -26,15 +26,14 @@ on:
       - "src/api/**/*.ts"
 
 steps:
-  - uses: anthropics/claude-code-action@v1
+  - uses: anthropics/claude-code-action@beta
     with:
-      prompt: |
+      direct_prompt: |
         Update the API documentation in README.md to reflect
         the changes made to the API endpoints in this PR.
-      anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
 ```
 
-When API files are modified, the action automatically detects that a `prompt` is provided and runs in agent mode. Claude updates your README with the latest endpoint documentation and pushes the changes back to the PR, keeping your docs in sync with your code.
+When API files are modified, Claude automatically updates your README with the latest endpoint documentation and pushes the changes back to the PR, keeping your docs in sync with your code.
 
 ## Author-Specific Code Reviews
 
@@ -51,26 +50,28 @@ jobs:
       github.event.pull_request.user.login == 'developer1' ||
       github.event.pull_request.user.login == 'external-contributor'
     steps:
-      - uses: anthropics/claude-code-action@v1
+      - uses: anthropics/claude-code-action@beta
         with:
-          prompt: |
+          direct_prompt: |
             Please provide a thorough review of this pull request.
             Pay extra attention to coding standards, security practices,
             and test coverage since this is from an external contributor.
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
 ```
 
-Perfect for automatically reviewing PRs from new team members, external contributors, or specific developers who need extra guidance. The action automatically runs in agent mode when a `prompt` is provided.
+Perfect for automatically reviewing PRs from new team members, external contributors, or specific developers who need extra guidance.
 
 ## Custom Prompt Templates
 
-Use the `prompt` input with GitHub context variables for dynamic automation:
+Use `override_prompt` for complete control over Claude's behavior with variable substitution:
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
-    prompt: |
-      Analyze PR #${{ github.event.pull_request.number }} in ${{ github.repository }} for security vulnerabilities.
+    override_prompt: |
+      Analyze PR #$PR_NUMBER in $REPOSITORY for security vulnerabilities.
+
+      Changed files:
+      $CHANGED_FILES
 
       Focus on:
       - SQL injection risks
@@ -79,35 +80,12 @@ Use the `prompt` input with GitHub context variables for dynamic automation:
       - Exposed secrets or credentials
 
       Provide severity ratings (Critical/High/Medium/Low) for any issues found.
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
 ```
 
-You can access any GitHub context variable using the standard GitHub Actions syntax:
+The `override_prompt` feature supports these variables:
 
-- `${{ github.repository }}` - The repository name
-- `${{ github.event.pull_request.number }}` - PR number
-- `${{ github.event.issue.number }}` - Issue number
-- `${{ github.event.pull_request.title }}` - PR title
-- `${{ github.event.pull_request.body }}` - PR description
-- `${{ github.event.comment.body }}` - Comment text
-- `${{ github.actor }}` - User who triggered the workflow
-- `${{ github.base_ref }}` - Base branch for PRs
-- `${{ github.head_ref }}` - Head branch for PRs
-
-## Advanced Configuration with claude_args
-
-For more control over Claude's behavior, use the `claude_args` input to pass CLI arguments directly:
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    prompt: "Review this PR for performance issues"
-    claude_args: |
-      --max-turns 15
-      --model claude-4-0-sonnet-20250805
-      --allowedTools Edit,Read,Write,Bash
-      --system-prompt "You are a performance optimization expert. Focus on identifying bottlenecks and suggesting improvements."
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-```
-
-This provides full access to Claude Code CLI capabilities while maintaining the simplified action interface.
+- `$REPOSITORY`, `$PR_NUMBER`, `$ISSUE_NUMBER`
+- `$PR_TITLE`, `$ISSUE_TITLE`, `$PR_BODY`, `$ISSUE_BODY`
+- `$PR_COMMENTS`, `$ISSUE_COMMENTS`, `$REVIEW_COMMENTS`
+- `$CHANGED_FILES`, `$TRIGGER_COMMENT`, `$TRIGGER_USERNAME`
+- `$BRANCH_NAME`, `$BASE_BRANCH`, `$EVENT_TYPE`, `$IS_PR`

docs/experimental.md

@@ -2,66 +2,65 @@
 
 **Note:** Experimental features are considered unstable and not supported for production use. They may change or be removed at any time.
 
-## Automatic Mode Detection
+## Execution Modes
 
-The action intelligently detects the appropriate execution mode based on your workflow context, eliminating the need for manual mode configuration.
+The action supports three execution modes, each optimized for different use cases:
 
-### Interactive Mode (Tag Mode)
+### Tag Mode (Default)
 
-Activated when Claude detects @mentions, issue assignments, or labels—without an explicit `prompt`.
+The traditional implementation mode that responds to @claude mentions, issue assignments, or labels.
 
-- **Triggers**: `@claude` mentions in comments, issue assignment to claude user, label application
+- **Triggers**: `@claude` mentions, issue assignment, label application
 - **Features**: Creates tracking comments with progress checkboxes, full implementation capabilities
-- **Use case**: Interactive code assistance, Q&A, and implementation requests
+- **Use case**: General-purpose code implementation and Q&A
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    # No prompt needed - responds to @claude mentions
+    # mode: tag is the default
 ```
 
-### Automation Mode (Agent Mode)
+### Agent Mode
 
-Automatically activated when you provide a `prompt` input.
+**Note: Agent mode is currently in active development and may undergo breaking changes.**
 
-- **Triggers**: Any GitHub event when `prompt` input is provided
-- **Features**: Direct execution without requiring @claude mentions, streamlined for automation
+For direct automation when an explicit prompt is provided.
+
+- **Triggers**: Works with any event when `prompt` input is provided
+- **Features**: Direct execution without @claude mentions, no tracking comments
 - **Use case**: Automated PR reviews, scheduled tasks, workflow automation
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
     prompt: |
       Check for outdated dependencies and create an issue if any are found.
-    # Automatically runs in agent mode when prompt is provided
+    # Mode is auto-detected when prompt is provided
 ```
 
-### How It Works
+### Experimental Review Mode
 
-The action uses this logic to determine the mode:
+**Warning: This is an experimental feature that may change or be removed at any time.**
 
-1. **If `prompt` is provided** → Runs in **agent mode** for automation
-2. **If no `prompt` but @claude is mentioned** → Runs in **tag mode** for interaction
-3. **If neither** → No action is taken
+For automated code reviews on pull requests.
 
-This automatic detection ensures your workflows are simpler and more intuitive, without needing to understand or configure different modes.
-
-### Advanced Mode Control
-
-For specialized use cases, you can fine-tune behavior using `claude_args`:
+- **Triggers**: Pull request events (`opened`, `synchronize`) or `@claude review` comments
+- **Features**: Provides detailed code reviews with inline comments and suggestions
+- **Use case**: Automated PR reviews, code quality checks
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
-    prompt: "Review this PR"
-    claude_args: |
-      --max-turns 20
-      --system-prompt "You are a code review specialist"
+    mode: experimental-review
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+    custom_instructions: |
+      Focus on code quality, security, and best practices.
 ```
 
+See [`examples/claude-modes.yml`](../examples/claude-modes.yml) and [`examples/claude-experimental-review-mode.yml`](../examples/claude-experimental-review-mode.yml) for complete examples of each mode.
+
 ## Network Restrictions
 
 For enhanced security, you can restrict Claude's network access to specific domains only. This feature is particularly useful for:
@@ -77,7 +76,7 @@ When `experimental_allowed_domains` is set, Claude can only access the domains y
 #### If using Anthropic API or subscription
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
     # Or: claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
@@ -88,7 +87,7 @@ When `experimental_allowed_domains` is set, Claude can only access the domains y
 #### If using AWS Bedrock
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     use_bedrock: "true"
     experimental_allowed_domains: |
@@ -99,7 +98,7 @@ When `experimental_allowed_domains` is set, Claude can only access the domains y
 #### If using Google Vertex AI
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     use_vertex: "true"
     experimental_allowed_domains: |
@@ -112,7 +111,7 @@ When `experimental_allowed_domains` is set, Claude can only access the domains y
 In addition to your provider domains, you may need to include GitHub-related domains. For GitHub.com users, common domains include:
 
 ```yaml
-- uses: anthropics/claude-code-action@v1
+- uses: anthropics/claude-code-action@beta
   with:
     anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
     experimental_allowed_domains: |

docs/faq.md

@@ -41,11 +41,10 @@ By default, Claude only uses commit tools for non-destructive changes to the bra
 - Never push to branches other than where it was invoked (either its own branch or the PR branch)
 - Never force push or perform destructive operations
 
-You can grant additional tools via the `claude_args` input if needed:
+You can grant additional tools via the `allowed_tools` input if needed:
 
 ```yaml
-claude_args: |
-  --allowedTools "Bash(git rebase:*)"  # Use with caution
+allowed_tools: "Bash(git rebase:*)" # Use with caution
 ```
 
 ### Why won't Claude create a pull request?
@@ -68,7 +67,7 @@ Yes! Claude can access GitHub Actions workflow runs, job logs, and test results
 
 2. Configure the action with additional permissions:
    ```yaml
-   - uses: anthropics/claude-code-action@v1
+   - uses: anthropics/claude-code-action@beta
      with:
        additional_permissions: |
          actions: read
@@ -106,51 +105,30 @@ If you need full history, you can configure this in your workflow before calling
 
 ## Configuration and Tools
 
-### How does automatic mode detection work?
+### What's the difference between `direct_prompt` and `custom_instructions`?
 
-The action intelligently detects whether to run in interactive mode or automation mode:
+These inputs serve different purposes in how Claude responds:
 
-- **With `prompt` input**: Runs in automation mode - executes immediately without waiting for @claude mentions
-- **Without `prompt` input**: Runs in interactive mode - waits for @claude mentions in comments
+- **`direct_prompt`**: Bypasses trigger detection entirely. When provided, Claude executes this exact instruction regardless of comments or mentions. Perfect for automated workflows where you want Claude to perform a specific task on every run (e.g., "Update the API documentation based on changes in this PR").
 
-This automatic detection eliminates the need to manually configure modes.
+- **`custom_instructions`**: Additional context added to Claude's system prompt while still respecting normal triggers. These instructions modify Claude's behavior but don't replace the triggering comment. Use this to give Claude standing instructions like "You have been granted additional tools for ...".
 
 Example:
 
 ```yaml
-# Automation mode - runs automatically
-prompt: "Review this PR for security vulnerabilities"
-# Interactive mode - waits for @claude mention
-# (no prompt provided)
-```
+# Using direct_prompt - runs automatically without @claude mention
+direct_prompt: "Review this PR for security vulnerabilities"
 
-### What happened to `direct_prompt` and `custom_instructions`?
-
-**These inputs are deprecated in v1.0:**
-
-- **`direct_prompt`** → Use `prompt` instead
-- **`custom_instructions`** → Use `claude_args` with `--system-prompt`
-
-Migration examples:
-
-```yaml
-# Old (v0.x)
-direct_prompt: "Review this PR"
-custom_instructions: "Focus on security"
-
-# New (v1.0)
-prompt: "Review this PR"
-claude_args: |
-  --system-prompt "Focus on security"
+# Using custom_instructions - still requires @claude trigger
+custom_instructions: "Focus on performance implications and suggest optimizations"
 ```
 
 ### Why doesn't Claude execute my bash commands?
 
-The Bash tool is **disabled by default** for security. To enable individual bash commands using `claude_args`:
+The Bash tool is **disabled by default** for security. To enable individual bash commands:
 
 ```yaml
-claude_args: |
-  --allowedTools "Bash(npm:*),Bash(git:*)"  # Allows only npm and git commands
+allowed_tools: "Bash(npm:*),Bash(git:*)" # Allows only npm and git commands
 ```
 
 ### Can Claude work across multiple repositories?
@@ -174,7 +152,7 @@ Claude Code Action automatically configures two MCP servers:
 1. **GitHub MCP server**: For GitHub API operations
 2. **File operations server**: For advanced file manipulation
 
-However, tools from these servers still need to be explicitly allowed via `claude_args` with `--allowedTools`.
+However, tools from these servers still need to be explicitly allowed via `allowed_tools`.
 
 ## Troubleshooting
 
@@ -190,7 +168,7 @@ The trigger uses word boundaries, so `@claude` must be a complete word. Variatio
 
 1. **Always specify permissions explicitly** in your workflow file
 2. **Use GitHub Secrets** for API keys - never hardcode them
-3. **Be specific with tool permissions** - only enable what's necessary via `claude_args`
+3. **Be specific with `allowed_tools`** - only enable what's necessary
 4. **Test in a separate branch** before using on important PRs
 5. **Monitor Claude's token usage** to avoid hitting API limits
 6. **Review Claude's changes** carefully before merging

docs/migration-guide.md

@@ -1,261 +0,0 @@
-# Migration Guide: v0.x to v1.0
-
-This guide helps you migrate from Claude Code Action v0.x to v1.0. The new version introduces intelligent mode detection and simplified configuration while maintaining backward compatibility for most use cases.
-
-## Overview of Changes
-
-### 🎯 Key Improvements in v1.0
-
-1. **Automatic Mode Detection** - No more manual `mode` configuration
-2. **Simplified Configuration** - Unified `prompt` and `claude_args` inputs
-3. **Better SDK Alignment** - Closer integration with Claude Code CLI
-
-### ⚠️ Breaking Changes
-
-The following inputs have been deprecated and replaced:
-
-| Deprecated Input      | Replacement                      | Notes                                         |
-| --------------------- | -------------------------------- | --------------------------------------------- |
-| `mode`                | Auto-detected                    | Action automatically chooses based on context |
-| `direct_prompt`       | `prompt`                         | Direct drop-in replacement                    |
-| `override_prompt`     | `prompt`                         | Use GitHub context variables instead          |
-| `custom_instructions` | `claude_args: --system-prompt`   | Move to CLI arguments                         |
-| `max_turns`           | `claude_args: --max-turns`       | Use CLI format                                |
-| `model`               | `claude_args: --model`           | Specify via CLI                               |
-| `allowed_tools`       | `claude_args: --allowedTools`    | Use CLI format                                |
-| `disallowed_tools`    | `claude_args: --disallowedTools` | Use CLI format                                |
-| `claude_env`          | `settings` with env object       | Use settings JSON                             |
-| `mcp_config`          | `claude_args: --mcp-config`      | Pass MCP config via CLI arguments             |
-
-## Migration Examples
-
-### Basic Interactive Workflow (@claude mentions)
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    mode: "tag"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    custom_instructions: "Follow our coding standards"
-    max_turns: "10"
-    allowed_tools: "Edit,Read,Write"
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --max-turns 10
-      --system-prompt "Follow our coding standards"
-      --allowedTools Edit,Read,Write
-```
-
-### Automation Workflow
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    mode: "agent"
-    direct_prompt: "Review this PR for security issues"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    model: "claude-3-5-sonnet-20241022"
-    allowed_tools: "Edit,Read,Write"
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    prompt: "Review this PR for security issues"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --model claude-4-0-sonnet-20250805
-      --allowedTools Edit,Read,Write
-```
-
-### Custom Template with Variables
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    override_prompt: |
-      Analyze PR #$PR_NUMBER in $REPOSITORY
-      Changed files: $CHANGED_FILES
-      Focus on security vulnerabilities
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    prompt: |
-      Analyze PR #${{ github.event.pull_request.number }} in ${{ github.repository }}
-      Focus on security vulnerabilities in the changed files
-```
-
-### Environment Variables
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    claude_env: |
-      NODE_ENV: test
-      CI: true
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    settings: |
-      {
-        "env": {
-          "NODE_ENV": "test",
-          "CI": "true"
-        }
-      }
-```
-
-## How Mode Detection Works
-
-The action now automatically detects the appropriate mode:
-
-1. **If `prompt` is provided** → Runs in **automation mode**
-
-   - Executes immediately without waiting for @claude mentions
-   - Perfect for scheduled tasks, PR automation, etc.
-
-2. **If no `prompt` but @claude is mentioned** → Runs in **interactive mode**
-
-   - Waits for and responds to @claude mentions
-   - Creates tracking comments with progress
-
-3. **If neither** → No action is taken
-
-## Advanced Configuration with claude_args
-
-The `claude_args` input provides direct access to Claude Code CLI arguments:
-
-```yaml
-claude_args: |
-  --max-turns 15
-  --model claude-4-0-sonnet-20250805
-  --allowedTools Edit,Read,Write,Bash
-  --disallowedTools WebSearch
-  --system-prompt "You are a senior engineer focused on code quality"
-  --mcp-config '{"mcpServers": {"custom": {"command": "npx", "args": ["-y", "@example/server"]}}}'
-```
-
-### Common claude_args Options
-
-| Option              | Description              | Example                                |
-| ------------------- | ------------------------ | -------------------------------------- |
-| `--max-turns`       | Limit conversation turns | `--max-turns 10`                       |
-| `--model`           | Specify Claude model     | `--model claude-4-0-sonnet-20250805`   |
-| `--allowedTools`    | Enable specific tools    | `--allowedTools Edit,Read,Write`       |
-| `--disallowedTools` | Disable specific tools   | `--disallowedTools WebSearch`          |
-| `--system-prompt`   | Add system instructions  | `--system-prompt "Focus on security"`  |
-| `--mcp-config`      | Add MCP server config    | `--mcp-config '{"mcpServers": {...}}'` |
-
-## Provider-Specific Updates
-
-### AWS Bedrock
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    use_bedrock: "true"
-    claude_args: |
-      --model anthropic.claude-4-0-sonnet-20250805-v1:0
-```
-
-### Google Vertex AI
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    use_vertex: "true"
-    claude_args: |
-      --model claude-4-0-sonnet@20250805
-```
-
-## MCP Configuration Migration
-
-### Adding Custom MCP Servers
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    mcp_config: |
-      {
-        "mcpServers": {
-          "custom-server": {
-            "command": "npx",
-            "args": ["-y", "@example/server"]
-          }
-        }
-      }
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    claude_args: |
-      --mcp-config '{"mcpServers": {"custom-server": {"command": "npx", "args": ["-y", "@example/server"]}}}'
-```
-
-You can also pass MCP configuration from a file:
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    claude_args: |
-      --mcp-config /path/to/mcp-config.json
-```
-
-## Step-by-Step Migration Checklist
-
-- [ ] Update action version from `@beta` to `@v1`
-- [ ] Remove `mode` input (auto-detected now)
-- [ ] Replace `direct_prompt` with `prompt`
-- [ ] Replace `override_prompt` with `prompt` using GitHub context
-- [ ] Move `custom_instructions` to `claude_args` with `--system-prompt`
-- [ ] Convert `max_turns` to `claude_args` with `--max-turns`
-- [ ] Convert `model` to `claude_args` with `--model`
-- [ ] Convert `allowed_tools` to `claude_args` with `--allowedTools`
-- [ ] Convert `disallowed_tools` to `claude_args` with `--disallowedTools`
-- [ ] Move `claude_env` to `settings` JSON format
-- [ ] Move `mcp_config` to `claude_args` with `--mcp-config`
-- [ ] Test workflow in a non-production environment
-
-## Getting Help
-
-If you encounter issues during migration:
-
-1. Check the [FAQ](./faq.md) for common questions
-2. Review [example workflows](../examples/) for reference
-3. Open an [issue](https://github.com/anthropics/claude-code-action/issues) for support
-
-## Version Compatibility
-
-- **v0.x workflows** will continue to work but with deprecation warnings
-- **v1.0** is the recommended version for all new workflows
-- Future versions may remove deprecated inputs entirely

docs/usage.md

@@ -18,26 +18,27 @@ jobs:
   claude-response:
     runs-on: ubuntu-latest
     steps:
-      - uses: anthropics/claude-code-action@v1
+      - uses: anthropics/claude-code-action@beta
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           # Or use OAuth token instead:
           # claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
-
-          # Optional: provide a prompt for automation workflows
-          # prompt: "Review this PR for security issues"
-
-          # Optional: pass advanced arguments to Claude CLI
-          # claude_args: |
-          #   --max-turns 10
-          #   --model claude-4-0-sonnet-20250805
-
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          # Optional: set execution mode (default: tag)
+          # mode: "tag"
           # Optional: add custom trigger phrase (default: @claude)
           # trigger_phrase: "/claude"
           # Optional: add assignee trigger for issues
           # assignee_trigger: "claude"
           # Optional: add label trigger for issues
           # label_trigger: "claude"
+          # Optional: add custom environment variables (YAML format)
+          # claude_env: |
+          #   NODE_ENV: test
+          #   DEBUG: true
+          #   API_URL: https://api.example.com
+          # Optional: limit the number of conversation turns
+          # max_turns: "5"
           # Optional: grant additional permissions (requires corresponding GitHub token permissions)
           # additional_permissions: |
           #   actions: read
@@ -47,127 +48,42 @@ jobs:
 
 ## Inputs
 
-| Input                          | Description                                                                                                          | Required | Default   |
-| ------------------------------ | -------------------------------------------------------------------------------------------------------------------- | -------- | --------- |
-| `anthropic_api_key`            | Anthropic API key (required for direct API, not needed for Bedrock/Vertex)                                           | No\*     | -         |
-| `claude_code_oauth_token`      | Claude Code OAuth token (alternative to anthropic_api_key)                                                           | No\*     | -         |
-| `prompt`                       | Instructions for Claude. Can be a direct prompt or custom template for automation workflows                          | No       | -         |
-| `claude_args`                  | Additional arguments to pass directly to Claude CLI (e.g., `--max-turns 10 --model claude-4-0-sonnet-20250805`)      | No       | ""        |
-| `base_branch`                  | The base branch to use for creating new branches (e.g., 'main', 'develop')                                           | No       | -         |
-| `use_sticky_comment`           | Use just one comment to deliver PR comments (only applies for pull_request event workflows)                          | No       | `false`   |
-| `github_token`                 | GitHub token for Claude to operate with. **Only include this if you're connecting a custom GitHub app of your own!** | No       | -         |
-| `use_bedrock`                  | Use Amazon Bedrock with OIDC authentication instead of direct Anthropic API                                          | No       | `false`   |
-| `use_vertex`                   | Use Google Vertex AI with OIDC authentication instead of direct Anthropic API                                        | No       | `false`   |
-| `mcp_config`                   | Additional MCP configuration (JSON string) that merges with the built-in GitHub MCP servers                          | No       | ""        |
-| `assignee_trigger`             | The assignee username that triggers the action (e.g. @claude). Only used for issue assignment                        | No       | -         |
-| `label_trigger`                | The label name that triggers the action when applied to an issue (e.g. "claude")                                     | No       | -         |
-| `trigger_phrase`               | The trigger phrase to look for in comments, issue/PR bodies, and issue titles                                        | No       | `@claude` |
-| `branch_prefix`                | The prefix to use for Claude branches (defaults to 'claude/', use 'claude-' for dash format)                         | No       | `claude/` |
-| `settings`                     | Claude Code settings as JSON string or path to settings JSON file                                                    | No       | ""        |
-| `additional_permissions`       | Additional permissions to enable. Currently supports 'actions: read' for viewing workflow results                    | No       | ""        |
-| `experimental_allowed_domains` | Restrict network access to these domains only (newline-separated).                                                   | No       | ""        |
-| `use_commit_signing`           | Enable commit signing using GitHub's commit signature verification. When false, Claude uses standard git commands    | No       | `false`   |
-| `allowed_bots`                 | Comma-separated list of allowed bot usernames, or '\*' to allow all bots. Empty string (default) allows no bots      | No       | ""        |
-
-### Deprecated Inputs
-
-These inputs are deprecated and will be removed in a future version:
-
-| Input                 | Description                                                                                  | Migration Path                                                 |
-| --------------------- | -------------------------------------------------------------------------------------------- | -------------------------------------------------------------- |
-| `mode`                | **DEPRECATED**: Mode is now automatically detected based on workflow context                 | Remove this input; the action auto-detects the correct mode    |
-| `direct_prompt`       | **DEPRECATED**: Use `prompt` instead                                                         | Replace with `prompt`                                          |
-| `override_prompt`     | **DEPRECATED**: Use `prompt` with template variables or `claude_args` with `--system-prompt` | Use `prompt` for templates or `claude_args` for system prompts |
-| `custom_instructions` | **DEPRECATED**: Use `claude_args` with `--system-prompt` or include in `prompt`              | Move instructions to `prompt` or use `claude_args`             |
-| `max_turns`           | **DEPRECATED**: Use `claude_args` with `--max-turns` instead                                 | Use `claude_args: "--max-turns 5"`                             |
-| `model`               | **DEPRECATED**: Use `claude_args` with `--model` instead                                     | Use `claude_args: "--model claude-4-0-sonnet-20250805"`        |
-| `fallback_model`      | **DEPRECATED**: Use `claude_args` with fallback configuration                                | Configure fallback in `claude_args` or `settings`              |
-| `allowed_tools`       | **DEPRECATED**: Use `claude_args` with `--allowedTools` instead                              | Use `claude_args: "--allowedTools Edit,Read,Write"`            |
-| `disallowed_tools`    | **DEPRECATED**: Use `claude_args` with `--disallowedTools` instead                           | Use `claude_args: "--disallowedTools WebSearch"`               |
-| `claude_env`          | **DEPRECATED**: Use `settings` with env configuration                                        | Configure environment in `settings` JSON                       |
+| Input                          | Description                                                                                                                           | Required | Default   |
+| ------------------------------ | ------------------------------------------------------------------------------------------------------------------------------------- | -------- | --------- |
+| `mode`                         | Execution mode: 'tag' (default - triggered by mentions/assignments), 'agent' (for automation), 'experimental-review' (for PR reviews) | No       | `tag`     |
+| `anthropic_api_key`            | Anthropic API key (required for direct API, not needed for Bedrock/Vertex)                                                            | No\*     | -         |
+| `claude_code_oauth_token`      | Claude Code OAuth token (alternative to anthropic_api_key)                                                                            | No\*     | -         |
+| `direct_prompt`                | Direct prompt for Claude to execute automatically without needing a trigger (for automated workflows)                                 | No       | -         |
+| `override_prompt`              | Complete replacement of Claude's prompt with custom template (supports variable substitution)                                         | No       | -         |
+| `base_branch`                  | The base branch to use for creating new branches (e.g., 'main', 'develop')                                                            | No       | -         |
+| `max_turns`                    | Maximum number of conversation turns Claude can take (limits back-and-forth exchanges)                                                | No       | -         |
+| `timeout_minutes`              | Timeout in minutes for execution                                                                                                      | No       | `30`      |
+| `use_sticky_comment`           | Use just one comment to deliver PR comments (only applies for pull_request event workflows)                                           | No       | `false`   |
+| `github_token`                 | GitHub token for Claude to operate with. **Only include this if you're connecting a custom GitHub app of your own!**                  | No       | -         |
+| `model`                        | Model to use (provider-specific format required for Bedrock/Vertex)                                                                   | No       | -         |
+| `fallback_model`               | Enable automatic fallback to specified model when primary model is unavailable                                                        | No       | -         |
+| `anthropic_model`              | **DEPRECATED**: Use `model` instead. Kept for backward compatibility.                                                                 | No       | -         |
+| `use_bedrock`                  | Use Amazon Bedrock with OIDC authentication instead of direct Anthropic API                                                           | No       | `false`   |
+| `use_vertex`                   | Use Google Vertex AI with OIDC authentication instead of direct Anthropic API                                                         | No       | `false`   |
+| `allowed_tools`                | Additional tools for Claude to use (the base GitHub tools will always be included)                                                    | No       | ""        |
+| `disallowed_tools`             | Tools that Claude should never use                                                                                                    | No       | ""        |
+| `custom_instructions`          | Additional custom instructions to include in the prompt for Claude                                                                    | No       | ""        |
+| `mcp_config`                   | Additional MCP configuration (JSON string) that merges with the built-in GitHub MCP servers                                           | No       | ""        |
+| `assignee_trigger`             | The assignee username that triggers the action (e.g. @claude). Only used for issue assignment                                         | No       | -         |
+| `label_trigger`                | The label name that triggers the action when applied to an issue (e.g. "claude")                                                      | No       | -         |
+| `trigger_phrase`               | The trigger phrase to look for in comments, issue/PR bodies, and issue titles                                                         | No       | `@claude` |
+| `branch_prefix`                | The prefix to use for Claude branches (defaults to 'claude/', use 'claude-' for dash format)                                          | No       | `claude/` |
+| `claude_env`                   | Custom environment variables to pass to Claude Code execution (YAML format)                                                           | No       | ""        |
+| `settings`                     | Claude Code settings as JSON string or path to settings JSON file                                                                     | No       | ""        |
+| `additional_permissions`       | Additional permissions to enable. Currently supports 'actions: read' for viewing workflow results                                     | No       | ""        |
+| `experimental_allowed_domains` | Restrict network access to these domains only (newline-separated).                                                                    | No       | ""        |
+| `use_commit_signing`           | Enable commit signing using GitHub's commit signature verification. When false, Claude uses standard git commands                     | No       | `false`   |
+| `allowed_bots`                 | Comma-separated list of allowed bot usernames, or '\*' to allow all bots. Empty string (default) allows no bots                       | No       | ""        |
 
 \*Required when using direct Anthropic API (default and when not using Bedrock or Vertex)
 
 > **Note**: This action is currently in beta. Features and APIs may change as we continue to improve the integration.
 
-## Upgrading from v0.x?
-
-For a comprehensive guide on migrating from v0.x to v1.0, including step-by-step instructions and examples, see our **[Migration Guide](./migration-guide.md)**.
-
-### Quick Migration Examples
-
-#### Interactive Workflows (with @claude mentions)
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    mode: "tag"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    custom_instructions: "Focus on security"
-    max_turns: "10"
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --max-turns 10
-      --system-prompt "Focus on security"
-```
-
-#### Automation Workflows
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    mode: "agent"
-    direct_prompt: "Update the API documentation"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    model: "claude-4-0-sonnet-20250805"
-    allowed_tools: "Edit,Read,Write"
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    prompt: "Update the API documentation"
-    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-    claude_args: |
-      --model claude-4-0-sonnet-20250805
-      --allowedTools Edit,Read,Write
-```
-
-#### Custom Templates
-
-**Before (v0.x):**
-
-```yaml
-- uses: anthropics/claude-code-action@beta
-  with:
-    override_prompt: |
-      Analyze PR #$PR_NUMBER for security issues.
-      Focus on: $CHANGED_FILES
-```
-
-**After (v1.0):**
-
-```yaml
-- uses: anthropics/claude-code-action@v1
-  with:
-    prompt: |
-      Analyze PR #${{ github.event.pull_request.number }} for security issues.
-      Focus on the changed files in this PR.
-```
-
 ## Ways to Tag @claude
 
 These examples show how to interact with Claude using comments in PRs and issues. By default, Claude will be triggered anytime you mention `@claude`, but you can customize the exact trigger phrase using the `trigger_phrase` input in the workflow.

examples/auto-fix-ci-signed/auto-fix-ci-signed.yml

@@ -1,97 +0,0 @@
-name: Auto Fix CI Failures (Signed Commits)
-
-on:
-  workflow_run:
-    workflows: ["CI"]
-    types:
-      - completed
-
-permissions:
-  contents: write
-  pull-requests: write
-  actions: read
-  issues: write
-  id-token: write # Required for OIDC token exchange
-
-jobs:
-  auto-fix-signed:
-    if: |
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.pull_requests[0] &&
-      !startsWith(github.event.workflow_run.head_branch, 'claude-auto-fix-ci-signed-')
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.workflow_run.head_branch }}
-          fetch-depth: 0
-          token: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Generate fix branch name
-        id: branch
-        run: |
-          BRANCH_NAME="claude-auto-fix-ci-signed-${{ github.event.workflow_run.head_branch }}-${{ github.run_id }}"
-          echo "branch_name=$BRANCH_NAME" >> $GITHUB_OUTPUT
-          # Don't create branch locally - MCP tools will create it via API
-          echo "Generated branch name: $BRANCH_NAME (will be created by MCP tools)"
-
-      - name: Get CI failure details
-        id: failure_details
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const run = await github.rest.actions.getWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-
-            const jobs = await github.rest.actions.listJobsForWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-
-            const failedJobs = jobs.data.jobs.filter(job => job.conclusion === 'failure');
-
-            let errorLogs = [];
-            for (const job of failedJobs) {
-              const logs = await github.rest.actions.downloadJobLogsForWorkflowRun({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                job_id: job.id
-              });
-              errorLogs.push({
-                jobName: job.name,
-                logs: logs.data
-              });
-            }
-
-            return {
-              runUrl: run.data.html_url,
-              failedJobs: failedJobs.map(j => j.name),
-              errorLogs: errorLogs
-            };
-
-      - name: Fix CI failures with Claude (Signed Commits)
-        id: claude
-        uses: anthropics/claude-code-action@v1-dev
-        env:
-          CLAUDE_BRANCH: ${{ steps.branch.outputs.branch_name }}
-          BASE_BRANCH: ${{ github.event.workflow_run.head_branch }}
-        with:
-          prompt: |
-            /fix-ci-signed 
-            Failed CI Run: ${{ fromJSON(steps.failure_details.outputs.result).runUrl }}
-            Failed Jobs: ${{ join(fromJSON(steps.failure_details.outputs.result).failedJobs, ', ') }}
-            PR Number: ${{ github.event.workflow_run.pull_requests[0].number }}
-            Branch Name: ${{ steps.branch.outputs.branch_name }}
-            Base Branch: ${{ github.event.workflow_run.head_branch }}
-            Repository: ${{ github.repository }}
-
-            Error logs:
-            ${{ toJSON(fromJSON(steps.failure_details.outputs.result).errorLogs) }}
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          use_commit_signing: true
-          claude_args: "--allowedTools 'Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash(bun:*),Bash(npm:*),Bash(npx:*),Bash(gh:*),mcp__github_file_ops__commit_files,mcp__github_file_ops__delete_files'"

examples/auto-fix-ci-signed/commands/fix-ci-signed.md

@@ -1,148 +0,0 @@
----
-description: Analyze and fix CI failures with signed commits using MCP tools
-allowed_tools: Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash(bun:*),Bash(npm:*),Bash(npx:*),Bash(gh:*),mcp__github_file_ops__commit_files,mcp__github_file_ops__delete_files
----
-
-# Fix CI Failures with Signed Commits
-
-You are tasked with analyzing CI failure logs and fixing the issues using MCP tools for signed commits. Follow these steps:
-
-## Context Provided
-
-$ARGUMENTS
-
-## Important Context Information
-
-Look for these key pieces of information in the arguments:
-
-- **Failed CI Run URL**: Link to the failed CI run
-- **Failed Jobs**: List of jobs that failed
-- **PR Number**: The PR number to comment on
-- **Branch Name**: The fix branch you're working on
-- **Base Branch**: The original PR branch
-- **Error logs**: Detailed logs from failed jobs
-
-## CRITICAL: Use MCP Tools for Git Operations
-
-**IMPORTANT**: You MUST use MCP tools for all git operations to ensure commits are properly signed. DO NOT use `git` commands directly via Bash.
-
-- Use `mcp__github_file_ops__commit_files` to commit and push changes
-- Use `mcp__github_file_ops__delete_files` to delete files
-
-## Step 1: Analyze the Failure
-
-Parse the provided CI failure information to understand:
-
-- Which jobs failed and why
-- The specific error messages and stack traces
-- Whether failures are test-related, build-related, or linting issues
-
-## Step 2: Search and Understand the Codebase
-
-Use MCP search tools to locate the failing code:
-
-- Use `mcp_github_file_ops_server__search_files` or `mcp_github_file_ops_server__file_search` to find failing test names or functions
-- Use `mcp_github_file_ops_server__read_file` to read source files mentioned in error messages
-- Review related configuration files (package.json, tsconfig.json, etc.)
-
-## Step 3: Apply Targeted Fixes
-
-Make minimal, focused changes:
-
-- **For test failures**: Determine if the test or implementation needs fixing
-- **For type errors**: Fix type definitions or correct the code logic
-- **For linting issues**: Apply formatting using the project's tools
-- **For build errors**: Resolve dependency or configuration issues
-- **For missing imports**: Add the necessary imports or install packages
-
-Requirements:
-
-- Only fix the actual CI failures, avoid unrelated changes
-- Follow existing code patterns and conventions
-- Ensure changes are production-ready, not temporary hacks
-- Preserve existing functionality while fixing issues
-
-## Step 4: Verify Fixes Locally
-
-Run available verification commands using Bash:
-
-- Execute the failing tests locally to confirm they pass
-- Run the project's lint command (check package.json for scripts)
-- Run type checking if available
-- Execute any build commands to ensure compilation succeeds
-
-## Step 5: Commit and Push Changes Using MCP
-
-**CRITICAL**: You MUST use MCP tools for committing and pushing:
-
-1. Prepare all your file changes (using Edit/MultiEdit/Write tools as needed)
-2. **Use `mcp__github_file_ops__commit_files` to commit and push all changes**
-   - Pass the file paths you've edited in the `files` array
-   - Set `message` to describe the specific fixes (e.g., "Fix CI failures: remove syntax errors and format code")
-   - The MCP tool will automatically create the branch specified in "Branch Name:" from the context and push signed commits
-
-**IMPORTANT**: The MCP tool will create the branch from the context automatically. The branch name from "Branch Name:" in the context will be used.
-
-Example usage:
-
-```
-mcp__github_file_ops__commit_files with:
-- files: ["src/utils/retry.ts", "src/other/file.ts"]  // List of file paths you edited
-- message: "Fix CI failures: [describe specific fixes]"
-```
-
-Note: The branch will be created from the Base Branch specified in the context.
-
-## Step 6: Create PR Comment (REQUIRED - DO NOT SKIP)
-
-**CRITICAL: You MUST create a PR comment after pushing. This step is MANDATORY.**
-
-After successfully pushing the fixes, you MUST create a comment on the original PR to notify about the auto-fix. DO NOT end the task without completing this step.
-
-1. Extract the PR number from the context provided in arguments (look for "PR Number:" in the context)
-2. **MANDATORY**: Execute the gh CLI command below to create the comment
-3. Verify the comment was created successfully
-
-**YOU MUST RUN THIS COMMAND** (replace placeholders with actual values from context):
-
-```bash
-gh pr comment PR_NUMBER --body "## 🤖 CI Auto-Fix Available (Signed Commits)
-
-Claude has analyzed the CI failures and prepared fixes with signed commits.
-
-[**→ Create pull request to fix CI**](https://github.com/OWNER/REPO/compare/BASE_BRANCH...FIX_BRANCH?quick_pull=1)
-
-_This fix was generated automatically based on the [failed CI run](FAILED_CI_RUN_URL)._"
-```
-
-**IMPORTANT REPLACEMENTS YOU MUST MAKE:**
-
-- Replace `PR_NUMBER` with the actual PR number from "PR Number:" in context
-- Replace `OWNER/REPO` with the repository from "Repository:" in context
-- Replace `BASE_BRANCH` with the branch from "Base Branch:" in context
-- Replace `FIX_BRANCH` with the branch from "Branch Name:" in context
-- Replace `FAILED_CI_RUN_URL` with the URL from "Failed CI Run:" in context
-
-**DO NOT SKIP THIS STEP. The task is NOT complete until the PR comment is created.**
-
-## Step 7: Final Verification
-
-**BEFORE CONSIDERING THE TASK COMPLETE**, verify you have:
-
-1. ✅ Fixed all CI failures
-2. ✅ Committed the changes using `mcp_github_file_ops_server__push_files`
-3. ✅ Verified the branch was pushed successfully
-4. ✅ **CREATED THE PR COMMENT using `gh pr comment` command from Step 6**
-
-If you have NOT created the PR comment, go back to Step 6 and execute the command.
-
-## Important Guidelines
-
-- Always use MCP tools for git operations to ensure proper commit signing
-- Focus exclusively on fixing the reported CI failures
-- Maintain code quality and follow the project's established patterns
-- If a fix requires significant refactoring, document why it's necessary
-- When multiple solutions exist, choose the simplest one that maintains code quality
-- **THE TASK IS NOT COMPLETE WITHOUT THE PR COMMENT**
-
-Begin by analyzing the failure details provided above.

examples/auto-fix-ci/auto-fix-ci.yml

@@ -1,97 +0,0 @@
-name: Auto Fix CI Failures
-
-on:
-  workflow_run:
-    workflows: ["CI"]
-    types:
-      - completed
-
-permissions:
-  contents: write
-  pull-requests: write
-  actions: read
-  issues: write
-  id-token: write # Required for OIDC token exchange
-
-jobs:
-  auto-fix:
-    if: |
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.pull_requests[0] &&
-      !startsWith(github.event.workflow_run.head_branch, 'claude-auto-fix-ci-')
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.workflow_run.head_branch }}
-          fetch-depth: 0
-          token: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Setup git identity
-        run: |
-          git config --global user.email "claude[bot]@users.noreply.github.com"
-          git config --global user.name "claude[bot]"
-
-      - name: Create fix branch
-        id: branch
-        run: |
-          BRANCH_NAME="claude-auto-fix-ci-${{ github.event.workflow_run.head_branch }}-${{ github.run_id }}"
-          git checkout -b "$BRANCH_NAME"
-          echo "branch_name=$BRANCH_NAME" >> $GITHUB_OUTPUT
-
-      - name: Get CI failure details
-        id: failure_details
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const run = await github.rest.actions.getWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-
-            const jobs = await github.rest.actions.listJobsForWorkflowRun({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              run_id: ${{ github.event.workflow_run.id }}
-            });
-
-            const failedJobs = jobs.data.jobs.filter(job => job.conclusion === 'failure');
-
-            let errorLogs = [];
-            for (const job of failedJobs) {
-              const logs = await github.rest.actions.downloadJobLogsForWorkflowRun({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                job_id: job.id
-              });
-              errorLogs.push({
-                jobName: job.name,
-                logs: logs.data
-              });
-            }
-
-            return {
-              runUrl: run.data.html_url,
-              failedJobs: failedJobs.map(j => j.name),
-              errorLogs: errorLogs
-            };
-
-      - name: Fix CI failures with Claude
-        id: claude
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          prompt: |
-            /fix-ci 
-            Failed CI Run: ${{ fromJSON(steps.failure_details.outputs.result).runUrl }}
-            Failed Jobs: ${{ join(fromJSON(steps.failure_details.outputs.result).failedJobs, ', ') }}
-            PR Number: ${{ github.event.workflow_run.pull_requests[0].number }}
-            Branch Name: ${{ steps.branch.outputs.branch_name }}
-            Base Branch: ${{ github.event.workflow_run.head_branch }}
-            Repository: ${{ github.repository }}
-
-            Error logs:
-            ${{ toJSON(fromJSON(steps.failure_details.outputs.result).errorLogs) }}
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: "--allowedTools 'Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash(git:*),Bash(bun:*),Bash(npm:*),Bash(npx:*),Bash(gh:*)'"

examples/auto-fix-ci/commands/fix-ci.md

@@ -1,127 +0,0 @@
----
-description: Analyze and fix CI failures by examining logs and making targeted fixes
-allowed_tools: Edit,MultiEdit,Write,Read,Glob,Grep,LS,Bash(git:*),Bash(bun:*),Bash(npm:*),Bash(npx:*),Bash(gh:*)
----
-
-# Fix CI Failures
-
-You are tasked with analyzing CI failure logs and fixing the issues. Follow these steps:
-
-## Context Provided
-
-$ARGUMENTS
-
-## Important Context Information
-
-Look for these key pieces of information in the arguments:
-
-- **Failed CI Run URL**: Link to the failed CI run
-- **Failed Jobs**: List of jobs that failed
-- **PR Number**: The PR number to comment on
-- **Branch Name**: The fix branch you're working on
-- **Base Branch**: The original PR branch
-- **Error logs**: Detailed logs from failed jobs
-
-## Step 1: Analyze the Failure
-
-Parse the provided CI failure information to understand:
-
-- Which jobs failed and why
-- The specific error messages and stack traces
-- Whether failures are test-related, build-related, or linting issues
-
-## Step 2: Search and Understand the Codebase
-
-Use search tools to locate the failing code:
-
-- Search for the failing test names or functions
-- Find the source files mentioned in error messages
-- Review related configuration files (package.json, tsconfig.json, etc.)
-
-## Step 3: Apply Targeted Fixes
-
-Make minimal, focused changes:
-
-- **For test failures**: Determine if the test or implementation needs fixing
-- **For type errors**: Fix type definitions or correct the code logic
-- **For linting issues**: Apply formatting using the project's tools
-- **For build errors**: Resolve dependency or configuration issues
-- **For missing imports**: Add the necessary imports or install packages
-
-Requirements:
-
-- Only fix the actual CI failures, avoid unrelated changes
-- Follow existing code patterns and conventions
-- Ensure changes are production-ready, not temporary hacks
-- Preserve existing functionality while fixing issues
-
-## Step 4: Verify Fixes Locally
-
-Run available verification commands:
-
-- Execute the failing tests locally to confirm they pass
-- Run the project's lint command (check package.json for scripts)
-- Run type checking if available
-- Execute any build commands to ensure compilation succeeds
-
-## Step 5: Commit and Push Changes
-
-After applying ALL fixes:
-
-1. Stage all modified files with `git add -A`
-2. Commit with: `git commit -m "Fix CI failures: [describe specific fixes]"`
-3. Document which CI jobs/tests were addressed
-4. **CRITICAL**: Push the branch with `git push origin HEAD` - You MUST push the branch after committing
-
-## Step 6: Create PR Comment (REQUIRED - DO NOT SKIP)
-
-**CRITICAL: You MUST create a PR comment after pushing. This step is MANDATORY.**
-
-After successfully pushing the fixes, you MUST create a comment on the original PR to notify about the auto-fix. DO NOT end the task without completing this step.
-
-1. Extract the PR number from the context provided in arguments (look for "PR Number:" in the context)
-2. **MANDATORY**: Execute the gh CLI command below to create the comment
-3. Verify the comment was created successfully
-
-**YOU MUST RUN THIS COMMAND** (replace placeholders with actual values from context):
-
-```bash
-gh pr comment PR_NUMBER --body "## 🤖 CI Auto-Fix Available
-
-Claude has analyzed the CI failures and prepared fixes.
-
-[**→ Create pull request to fix CI**](https://github.com/OWNER/REPO/compare/BASE_BRANCH...FIX_BRANCH?quick_pull=1)
-
-_This fix was generated automatically based on the [failed CI run](FAILED_CI_RUN_URL)._"
-```
-
-**IMPORTANT REPLACEMENTS YOU MUST MAKE:**
-
-- Replace `PR_NUMBER` with the actual PR number from "PR Number:" in context
-- Replace `OWNER/REPO` with the repository from "Repository:" in context
-- Replace `BASE_BRANCH` with the branch from "Base Branch:" in context
-- Replace `FIX_BRANCH` with the branch from "Branch Name:" in context
-- Replace `FAILED_CI_RUN_URL` with the URL from "Failed CI Run:" in context
-
-**DO NOT SKIP THIS STEP. The task is NOT complete until the PR comment is created.**
-
-## Step 7: Final Verification
-
-**BEFORE CONSIDERING THE TASK COMPLETE**, verify you have:
-
-1. ✅ Fixed all CI failures
-2. ✅ Committed the changes
-3. ✅ Pushed the branch with `git push origin HEAD`
-4. ✅ **CREATED THE PR COMMENT using `gh pr comment` command from Step 6**
-
-If you have NOT created the PR comment, go back to Step 6 and execute the command.
-
-## Important Guidelines
-
-- Focus exclusively on fixing the reported CI failures
-- Maintain code quality and follow the project's established patterns
-- If a fix requires significant refactoring, document why it's necessary
-- When multiple solutions exist, choose the simplest one that maintains code quality
-- **THE TASK IS NOT COMPLETE WITHOUT THE PR COMMENT**
-
-Begin by analyzing the failure details provided above.

examples/claude-args-example.yml

@@ -15,13 +15,15 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Run Claude with custom arguments
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@v1
         with:
+          mode: agent
           prompt: ${{ github.event.inputs.prompt }}
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
 
-          # claude_args provides direct CLI argument control
-          # This allows full customization of Claude's behavior
+          # New claudeArgs input allows direct CLI argument control
+          # Order: -p [claudeArgs] [legacy options] [BASE_ARGS]
+          # Note: BASE_ARGS (--verbose --output-format stream-json) cannot be overridden
           claude_args: |
             --max-turns 15
             --model claude-opus-4-1-20250805

examples/claude-auto-review.yml

@@ -1,4 +1,4 @@
-name: Claude PR Auto Review
+name: Claude Auto Review
 
 on:
   pull_request:
@@ -18,9 +18,10 @@ jobs:
           fetch-depth: 1
 
       - name: Automatic PR Review
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@v1
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          timeout_minutes: "60"
           prompt: |
             Please review this pull request and provide comprehensive feedback.
 
@@ -31,10 +32,7 @@ jobs:
             - Security implications
             - Test coverage
             - Documentation updates if needed
-            - Verify that README.md and docs are updated for any new features or config changes
 
             Provide constructive feedback with specific suggestions for improvement.
             Use inline comments to highlight specific areas of concern.
-
-          claude_args: |
-            --allowedTools "mcp__github__create_pending_pull_request_review,mcp__github__add_comment_to_pending_review,mcp__github__submit_pending_pull_request_review,mcp__github__get_pull_request_diff"
+          # allowed_tools: "mcp__github__create_pending_pull_request_review,mcp__github__add_comment_to_pending_review,mcp__github__submit_pending_pull_request_review,mcp__github__get_pull_request_diff"

examples/claude-experimental-review-mode.yml

@@ -27,10 +27,11 @@ jobs:
           fetch-depth: 0 # Full history for better diff analysis
 
       - name: Code Review with Claude
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@v1
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           # github_token not needed - uses default GITHUB_TOKEN for GitHub operations
+          timeout_minutes: "30"
           prompt: |
             Review this pull request comprehensively.
 

examples/claude-modes.yml

@@ -1,21 +1,21 @@
-name: Claude Automatic Mode Detection Examples
+name: Claude Mode Examples
 
 on:
-  # Events for interactive mode (responds to @claude mentions)
+  # Events for tag mode
   issue_comment:
     types: [created]
   issues:
     types: [opened, labeled]
   pull_request:
     types: [opened]
-  # Events for automation mode (runs with explicit prompt)
+  # Events for agent mode (only these work with agent mode)
   workflow_dispatch:
   schedule:
     - cron: "0 0 * * 0" # Weekly on Sunday
 
 jobs:
-  # Interactive Mode - Activated automatically when no prompt is provided
-  interactive-mode-example:
+  # Tag Mode (Default) - Traditional implementation
+  tag-mode-example:
     runs-on: ubuntu-latest
     permissions:
       contents: write
@@ -23,17 +23,18 @@ jobs:
       issues: write
       id-token: write
     steps:
-      - uses: anthropics/claude-code-action@v1-dev
+      - uses: anthropics/claude-code-action@beta
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          # Interactive mode (auto-detected when no prompt):
+          # Tag mode (default) behavior:
           # - Scans for @claude mentions in comments, issues, and PRs
           # - Only acts when trigger phrase is found
           # - Creates tracking comments with progress checkboxes
           # - Perfect for: Interactive Q&A, on-demand code changes
 
-  # Automation Mode - Activated automatically when prompt is provided
-  automation-mode-scheduled-task:
+  # Agent Mode - Automation for workflow_dispatch and schedule events
+  agent-mode-scheduled-task:
+    # Only works with workflow_dispatch or schedule events
     runs-on: ubuntu-latest
     permissions:
       contents: write
@@ -41,14 +42,15 @@ jobs:
       issues: write
       id-token: write
     steps:
-      - uses: anthropics/claude-code-action@v1-dev
+      - uses: anthropics/claude-code-action@beta
         with:
+          mode: agent
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          prompt: |
+          override_prompt: |
             Check for outdated dependencies and security vulnerabilities.
             Create an issue if any critical problems are found.
-          # Automation mode (auto-detected when prompt provided):
-          # - Works with any GitHub event
-          # - Executes immediately without waiting for @claude mentions
-          # - No tracking comments created
-          # - Perfect for: scheduled maintenance, automated reviews, CI/CD tasks
+          # Agent mode behavior:
+          # - ONLY works with workflow_dispatch and schedule events
+          # - Does NOT work with pull_request, issues, or issue_comment events
+          # - No @claude mention needed for supported events
+          # - Perfect for: scheduled maintenance, manual automation runs

examples/claude-pr-path-specific.yml

@@ -24,9 +24,10 @@ jobs:
           fetch-depth: 1
 
       - name: Claude Code Review
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@v1
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          timeout_minutes: "60"
           prompt: |
             Please review this pull request focusing on the changed files.
             Provide feedback on:

examples/claude-review-from-author.yml

@@ -23,9 +23,10 @@ jobs:
           fetch-depth: 1
 
       - name: Review PR from Specific Author
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@v1
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          timeout_minutes: "60"
           prompt: |
             Please provide a thorough review of this pull request.
 

examples/claude.yml

@@ -1,4 +1,4 @@
-name: Claude Code
+name: Claude PR Assistant
 
 on:
   issue_comment:
@@ -11,52 +11,38 @@ on:
     types: [submitted]
 
 jobs:
-  claude:
+  claude-code-action:
     if: |
       (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@claude')) ||
       (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@claude')) ||
       (github.event_name == 'pull_request_review' && contains(github.event.review.body, '@claude')) ||
-      (github.event_name == 'issues' && (contains(github.event.issue.body, '@claude') || contains(github.event.issue.title, '@claude')))
+      (github.event_name == 'issues' && contains(github.event.issue.body, '@claude'))
     runs-on: ubuntu-latest
     permissions:
-      contents: write
-      pull-requests: write
-      issues: write
+      contents: read
+      pull-requests: read
+      issues: read
       id-token: write
-      actions: read # Required for Claude to read CI results on PRs
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
         with:
           fetch-depth: 1
 
-      - name: Run Claude Code
-        id: claude
-        uses: anthropics/claude-code-action@v1-dev
+      - name: Run Claude PR Action
+        uses: anthropics/claude-code-action@beta
         with:
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-
-          # This is an optional setting that allows Claude to read CI results on PRs
-          additional_permissions: |
-            actions: read
-
-          # Optional: Customize the trigger phrase (default: @claude)
-          # trigger_phrase: "/claude"
-
-          # Optional: Trigger when specific user is assigned to an issue
-          # assignee_trigger: "claude-bot"
-
-          # Optional: Configure Claude's behavior with CLI arguments
-          # claude_args: |
-          #   --model claude-opus-4-1-20250805
-          #   --max-turns 10
-          #   --allowedTools "Bash(npm install),Bash(npm run build),Bash(npm run test:*),Bash(npm run lint:*)"
-          #   --system-prompt "Follow our coding standards. Ensure all new code has tests. Use TypeScript for new files."
-
-          # Optional: Advanced settings configuration
-          # settings: |
-          #   {
-          #     "env": {
-          #       "NODE_ENV": "test"
-          #     }
-          #   }
+          # Or use OAuth token instead:
+          # claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
+          timeout_minutes: "60"
+          # mode: tag  # Default: responds to @claude mentions
+          # Optional: Restrict network access to specific domains only
+          # experimental_allowed_domains: |
+          #   .anthropic.com
+          #   .github.com
+          #   api.github.com
+          #   .githubusercontent.com
+          #   bun.sh
+          #   registry.npmjs.org
+          #   .blob.core.windows.net

examples/issue-deduplication.yml

@@ -1,63 +0,0 @@
-name: Issue Deduplication
-
-on:
-  issues:
-    types: [opened]
-
-jobs:
-  deduplicate:
-    runs-on: ubuntu-latest
-    timeout-minutes: 10
-    permissions:
-      contents: read
-      issues: write
-      id-token: write
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 1
-
-      - name: Check for duplicate issues
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          prompt: |
-            Analyze this new issue and check if it's a duplicate of existing issues in the repository.
-
-            Issue: #${{ github.event.issue.number }}
-            Repository: ${{ github.repository }}
-
-            Your task:
-            1. Use mcp__github__get_issue to get details of the current issue (#${{ github.event.issue.number }})
-            2. Search for similar existing issues using mcp__github__search_issues with relevant keywords from the issue title and body
-            3. Compare the new issue with existing ones to identify potential duplicates
-
-            Criteria for duplicates:
-            - Same bug or error being reported
-            - Same feature request (even if worded differently)
-            - Same question being asked
-            - Issues describing the same root problem
-
-            If you find duplicates:
-            - Add a comment on the new issue linking to the original issue(s)
-            - Apply a "duplicate" label to the new issue
-            - Be polite and explain why it's a duplicate
-            - Suggest the user follow the original issue for updates
-
-            If it's NOT a duplicate:
-            - Don't add any comments
-            - You may apply appropriate topic labels based on the issue content
-
-            Use these tools:
-            - mcp__github__get_issue: Get issue details
-            - mcp__github__search_issues: Search for similar issues
-            - mcp__github__list_issues: List recent issues if needed
-            - mcp__github__create_issue_comment: Add a comment if duplicate found
-            - mcp__github__update_issue: Add labels
-
-            Be thorough but efficient. Focus on finding true duplicates, not just similar issues.
-
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: |
-            --allowedTools "mcp__github__get_issue,mcp__github__search_issues,mcp__github__list_issues,mcp__github__create_issue_comment,mcp__github__update_issue,mcp__github__get_issue_comments"

examples/issue-triage.yml

@@ -1,75 +0,0 @@
-name: Issue Triage
-on:
-  issues:
-    types: [opened]
-
-jobs:
-  triage-issue:
-    runs-on: ubuntu-latest
-    timeout-minutes: 10
-    permissions:
-      contents: read
-      issues: write
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-
-      - name: Triage issue with Claude
-        uses: anthropics/claude-code-action@v1-dev
-        with:
-          prompt: |
-            You're an issue triage assistant for GitHub issues. Your task is to analyze the issue and select appropriate labels from the provided list.
-
-            IMPORTANT: Don't post any comments or messages to the issue. Your only action should be to apply labels.
-
-            Issue Information:
-            - REPO: ${{ github.repository }}
-            - ISSUE_NUMBER: ${{ github.event.issue.number }}
-
-            TASK OVERVIEW:
-
-            1. First, fetch the list of labels available in this repository by running: `gh label list`. Run exactly this command with nothing else.
-
-            2. Next, use the GitHub tools to get context about the issue:
-               - You have access to these tools:
-                 - mcp__github__get_issue: Use this to retrieve the current issue's details including title, description, and existing labels
-                 - mcp__github__get_issue_comments: Use this to read any discussion or additional context provided in the comments
-                 - mcp__github__update_issue: Use this to apply labels to the issue (do not use this for commenting)
-                 - mcp__github__search_issues: Use this to find similar issues that might provide context for proper categorization and to identify potential duplicate issues
-                 - mcp__github__list_issues: Use this to understand patterns in how other issues are labeled
-               - Start by using mcp__github__get_issue to get the issue details
-
-            3. Analyze the issue content, considering:
-               - The issue title and description
-               - The type of issue (bug report, feature request, question, etc.)
-               - Technical areas mentioned
-               - Severity or priority indicators
-               - User impact
-               - Components affected
-
-            4. Select appropriate labels from the available labels list provided above:
-               - Choose labels that accurately reflect the issue's nature
-               - Be specific but comprehensive
-               - Select priority labels if you can determine urgency (high-priority, med-priority, or low-priority)
-               - Consider platform labels (android, ios) if applicable
-               - If you find similar issues using mcp__github__search_issues, consider using a "duplicate" label if appropriate. Only do so if the issue is a duplicate of another OPEN issue.
-
-            5. Apply the selected labels:
-               - Use mcp__github__update_issue to apply your selected labels
-               - DO NOT post any comments explaining your decision
-               - DO NOT communicate directly with users
-               - If no labels are clearly applicable, do not apply any labels
-
-            IMPORTANT GUIDELINES:
-            - Be thorough in your analysis
-            - Only select labels from the provided list above
-            - DO NOT post any comments to the issue
-            - Your ONLY action should be to apply labels using mcp__github__update_issue
-            - It's okay to not add any labels if none are clearly applicable
-
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          claude_args: |
-            --allowedTools "Bash(gh label list),mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__update_issue,mcp__github__search_issues,mcp__github__list_issues"

examples/workflow-dispatch-agent.yml

@@ -28,10 +28,11 @@ jobs:
           fetch-depth: 2 # Need at least 2 commits to analyze the latest
 
       - name: Run Claude Analysis
-        uses: anthropics/claude-code-action@v1-dev
+        uses: anthropics/claude-code-action@beta
         with:
+          mode: agent
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          prompt: |
+          override_prompt: |
             Analyze the latest commit in this repository.
 
             ${{ github.event.inputs.analysis_type == 'summarize-commit' && 'Task: Provide a clear, concise summary of what changed in the latest commit. Include the commit message, files changed, and the purpose of the changes.' || '' }}

src/create-prompt/index.ts

@@ -750,7 +750,7 @@ export async function createPrompt(
       modeContext.claudeBranch,
     );
 
-    await mkdir(`${process.env.RUNNER_TEMP || "/tmp"}/claude-prompts`, {
+    await mkdir(`${process.env.RUNNER_TEMP}/claude-prompts`, {
       recursive: true,
     });
 
@@ -769,7 +769,7 @@ export async function createPrompt(
 
     // Write the prompt file
     await writeFile(
-      `${process.env.RUNNER_TEMP || "/tmp"}/claude-prompts/claude-prompt.txt`,
+      `${process.env.RUNNER_TEMP}/claude-prompts/claude-prompt.txt`,
       promptContent,
     );
 

src/entrypoints/collect-inputs.ts

@@ -1,58 +0,0 @@
-import * as core from "@actions/core";
-
-export function collectActionInputsPresence(): void {
-  const inputDefaults: Record<string, string> = {
-    trigger_phrase: "@claude",
-    assignee_trigger: "",
-    label_trigger: "claude",
-    base_branch: "",
-    branch_prefix: "claude/",
-    allowed_bots: "",
-    mode: "tag",
-    model: "",
-    anthropic_model: "",
-    fallback_model: "",
-    allowed_tools: "",
-    disallowed_tools: "",
-    custom_instructions: "",
-    direct_prompt: "",
-    override_prompt: "",
-    additional_permissions: "",
-    claude_env: "",
-    settings: "",
-    anthropic_api_key: "",
-    claude_code_oauth_token: "",
-    github_token: "",
-    max_turns: "",
-    use_sticky_comment: "false",
-    use_commit_signing: "false",
-    experimental_allowed_domains: "",
-  };
-
-  const allInputsJson = process.env.ALL_INPUTS;
-  if (!allInputsJson) {
-    console.log("ALL_INPUTS environment variable not found");
-    core.setOutput("action_inputs_present", JSON.stringify({}));
-    return;
-  }
-
-  let allInputs: Record<string, string>;
-  try {
-    allInputs = JSON.parse(allInputsJson);
-  } catch (e) {
-    console.error("Failed to parse ALL_INPUTS JSON:", e);
-    core.setOutput("action_inputs_present", JSON.stringify({}));
-    return;
-  }
-
-  const presentInputs: Record<string, boolean> = {};
-
-  for (const [name, defaultValue] of Object.entries(inputDefaults)) {
-    const actualValue = allInputs[name] || "";
-
-    const isSet = actualValue !== defaultValue;
-    presentInputs[name] = isSet;
-  }
-
-  core.setOutput("action_inputs_present", JSON.stringify(presentInputs));
-}

src/entrypoints/prepare.ts

@@ -12,12 +12,9 @@ import { createOctokit } from "../github/api/client";
 import { parseGitHubContext, isEntityContext } from "../github/context";
 import { getMode } from "../modes/registry";
 import { prepare } from "../prepare";
-import { collectActionInputsPresence } from "./collect-inputs";
 
 async function run() {
   try {
-    collectActionInputsPresence();
-
     // Parse GitHub context first to enable mode detection
     const context = parseGitHubContext();
 
@@ -44,18 +41,11 @@ async function run() {
     // Check trigger conditions
     const containsTrigger = mode.shouldTrigger(context);
 
-    // Debug logging
-    console.log(`Mode: ${mode.name}`);
-    console.log(`Context prompt: ${context.inputs?.prompt || "NO PROMPT"}`);
-    console.log(`Trigger result: ${containsTrigger}`);
-
     // Set output for action.yml to check
     core.setOutput("contains_trigger", containsTrigger.toString());
 
     if (!containsTrigger) {
       console.log("No trigger found, skipping remaining steps");
-      // Still set github_token output even when skipping
-      core.setOutput("github_token", githubToken);
       return;
     }
 
@@ -66,12 +56,10 @@ async function run() {
       mode,
       githubToken,
     });
+    core.setOutput("GITHUB_TOKEN", githubToken);
 
     // MCP config is handled by individual modes (tag/agent) and included in their claude_args output
 
-    // Expose the GitHub token (Claude App token) as an output
-    core.setOutput("github_token", githubToken);
-
     // Step 6: Get system prompt from mode if available
     if (mode.getSystemPrompt) {
       const modeContext = mode.prepareContext(context, {

src/github/context.ts

@@ -6,7 +6,6 @@ import type {
   PullRequestEvent,
   PullRequestReviewEvent,
   PullRequestReviewCommentEvent,
-  WorkflowRunEvent,
 } from "@octokit/webhooks-types";
 // Custom types for GitHub Actions events that aren't webhooks
 export type WorkflowDispatchEvent = {
@@ -45,11 +44,7 @@ const ENTITY_EVENT_NAMES = [
   "pull_request_review_comment",
 ] as const;
 
-const AUTOMATION_EVENT_NAMES = [
-  "workflow_dispatch",
-  "schedule",
-  "workflow_run",
-] as const;
+const AUTOMATION_EVENT_NAMES = ["workflow_dispatch", "schedule"] as const;
 
 // Derive types from constants for better maintainability
 type EntityEventName = (typeof ENTITY_EVENT_NAMES)[number];
@@ -91,10 +86,10 @@ export type ParsedGitHubContext = BaseContext & {
   isPR: boolean;
 };
 
-// Context for automation events (workflow_dispatch, schedule, workflow_run)
+// Context for automation events (workflow_dispatch, schedule)
 export type AutomationContext = BaseContext & {
   eventName: AutomationEventName;
-  payload: WorkflowDispatchEvent | ScheduleEvent | WorkflowRunEvent;
+  payload: WorkflowDispatchEvent | ScheduleEvent;
 };
 
 // Union type for all contexts
@@ -190,13 +185,6 @@ export function parseGitHubContext(): GitHubContext {
         payload: context.payload as unknown as ScheduleEvent,
       };
     }
-    case "workflow_run": {
-      return {
-        ...commonFields,
-        eventName: "workflow_run",
-        payload: context.payload as unknown as WorkflowRunEvent,
-      };
-    }
     default:
       throw new Error(`Unsupported event type: ${context.eventName}`);
   }

src/github/operations/git-config.ts

@@ -6,7 +6,7 @@
  */
 
 import { $ } from "bun";
-import type { GitHubContext } from "../context";
+import type { ParsedGitHubContext } from "../context";
 import { GITHUB_SERVER_URL } from "../api/config";
 
 type GitUser = {
@@ -16,7 +16,7 @@ type GitUser = {
 
 export async function configureGitAuth(
   githubToken: string,
-  context: GitHubContext,
+  context: ParsedGitHubContext,
   user: GitUser | null,
 ) {
   console.log("Configuring git authentication for non-signing mode");

src/github/token.ts

@@ -31,30 +31,8 @@ async function exchangeForAppToken(oidcToken: string): Promise<string> {
     const responseJson = (await response.json()) as {
       error?: {
         message?: string;
-        details?: {
-          error_code?: string;
-        };
       };
-      type?: string;
-      message?: string;
     };
-
-    // Check for specific workflow validation error codes that should skip the action
-    const errorCode = responseJson.error?.details?.error_code;
-
-    if (errorCode === "workflow_not_found_on_default_branch") {
-      const message =
-        responseJson.message ??
-        responseJson.error?.message ??
-        "Workflow validation failed";
-      core.warning(`Skipping action due to workflow validation: ${message}`);
-      console.log(
-        "Action skipped due to workflow validation error. This is expected when adding Claude Code workflows to new repositories or on PRs with workflow changes. If you're seeing this, your workflow will begin working once you merge your PR.",
-      );
-      core.setOutput("skipped_due_to_workflow_validation_mismatch", "true");
-      process.exit(0);
-    }
-
     console.error(
       `App token exchange failed: ${response.status} ${response.statusText} - ${responseJson?.error?.message ?? "Unknown error"}`,
     );
@@ -99,9 +77,8 @@ export async function setupGitHubToken(): Promise<string> {
     core.setOutput("GITHUB_TOKEN", appToken);
     return appToken;
   } catch (error) {
-    // Only set failed if we get here - workflow validation errors will exit(0) before this
     core.setFailed(
-      `Failed to setup GitHub token: ${error}\n\nIf you instead wish to use this action with a custom GitHub token or custom GitHub app, provide a \`github_token\` in the \`uses\` section of the app in your workflow yml file.`,
+      `Failed to setup GitHub token: ${error}.\n\nIf you instead wish to use this action with a custom GitHub token or custom GitHub app, provide a \`github_token\` in the \`uses\` section of the app in your workflow yml file.`,
     );
     process.exit(1);
   }

src/github/utils/sanitizer.ts

@@ -58,41 +58,6 @@ export function sanitizeContent(content: string): string {
   content = stripMarkdownLinkTitles(content);
   content = stripHiddenAttributes(content);
   content = normalizeHtmlEntities(content);
-  content = redactGitHubTokens(content);
-  return content;
-}
-
-export function redactGitHubTokens(content: string): string {
-  // GitHub Personal Access Tokens (classic): ghp_XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX (40 chars)
-  content = content.replace(
-    /\bghp_[A-Za-z0-9]{36}\b/g,
-    "[REDACTED_GITHUB_TOKEN]",
-  );
-
-  // GitHub OAuth tokens: gho_XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX (40 chars)
-  content = content.replace(
-    /\bgho_[A-Za-z0-9]{36}\b/g,
-    "[REDACTED_GITHUB_TOKEN]",
-  );
-
-  // GitHub installation tokens: ghs_XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX (40 chars)
-  content = content.replace(
-    /\bghs_[A-Za-z0-9]{36}\b/g,
-    "[REDACTED_GITHUB_TOKEN]",
-  );
-
-  // GitHub refresh tokens: ghr_XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX (40 chars)
-  content = content.replace(
-    /\bghr_[A-Za-z0-9]{36}\b/g,
-    "[REDACTED_GITHUB_TOKEN]",
-  );
-
-  // GitHub fine-grained personal access tokens: github_pat_XXXXXXXXXX (up to 255 chars)
-  content = content.replace(
-    /\bgithub_pat_[A-Za-z0-9_]{11,221}\b/g,
-    "[REDACTED_GITHUB_TOKEN]",
-  );
-
   return content;
 }
 

src/mcp/github-comment-server.ts

@@ -6,7 +6,6 @@ import { z } from "zod";
 import { GITHUB_API_URL } from "../github/api/config";
 import { Octokit } from "@octokit/rest";
 import { updateClaudeComment } from "../github/operations/comments/update-claude-comment";
-import { sanitizeContent } from "../github/utils/sanitizer";
 
 // Get repository information from environment variables
 const REPO_OWNER = process.env.REPO_OWNER;
@@ -55,13 +54,11 @@ server.tool(
       const isPullRequestReviewComment =
         eventName === "pull_request_review_comment";
 
-      const sanitizedBody = sanitizeContent(body);
-
       const result = await updateClaudeComment(octokit, {
         owner,
         repo,
         commentId,
-        body: sanitizedBody,
+        body,
         isPullRequestReviewComment,
       });
 

src/mcp/github-file-ops-server.ts

@@ -3,9 +3,8 @@
 import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { z } from "zod";
-import { readFile, stat } from "fs/promises";
+import { readFile } from "fs/promises";
 import { join } from "path";
-import { constants } from "fs";
 import fetch from "node-fetch";
 import { GITHUB_API_URL } from "../github/api/config";
 import { retryWithBackoff } from "../utils/retry";
@@ -163,34 +162,6 @@ async function getOrCreateBranchRef(
   return baseSha;
 }
 
-// Get the appropriate Git file mode for a file
-async function getFileMode(filePath: string): Promise<string> {
-  try {
-    const fileStat = await stat(filePath);
-    if (fileStat.isFile()) {
-      // Check if execute bit is set for user
-      if (fileStat.mode & constants.S_IXUSR) {
-        return "100755"; // Executable file
-      } else {
-        return "100644"; // Regular file
-      }
-    } else if (fileStat.isDirectory()) {
-      return "040000"; // Directory (tree)
-    } else if (fileStat.isSymbolicLink()) {
-      return "120000"; // Symbolic link
-    } else {
-      // Fallback for unknown file types
-      return "100644";
-    }
-  } catch (error) {
-    // If we can't stat the file, default to regular file
-    console.warn(
-      `Could not determine file mode for ${filePath}, using default: ${error}`,
-    );
-    return "100644";
-  }
-}
-
 // Commit files tool
 server.tool(
   "commit_files",
@@ -252,9 +223,6 @@ server.tool(
             ? filePath
             : join(REPO_DIR, filePath);
 
-          // Get the proper file mode based on file permissions
-          const fileMode = await getFileMode(fullPath);
-
           // Check if file is binary (images, etc.)
           const isBinaryFile =
             /\.(png|jpg|jpeg|gif|webp|ico|pdf|zip|tar|gz|exe|bin|woff|woff2|ttf|eot)$/i.test(
@@ -293,7 +261,7 @@ server.tool(
             // Return tree entry with blob SHA
             return {
               path: filePath,
-              mode: fileMode,
+              mode: "100644",
               type: "blob",
               sha: blobData.sha,
             };
@@ -302,7 +270,7 @@ server.tool(
             const content = await readFile(fullPath, "utf-8");
             return {
               path: filePath,
-              mode: fileMode,
+              mode: "100644",
               type: "blob",
               content: content,
             };
@@ -385,22 +353,15 @@ server.tool(
 
           if (!updateRefResponse.ok) {
             const errorText = await updateRefResponse.text();
-
-            // Provide a more helpful error message for 403 permission errors
-            if (updateRefResponse.status === 403) {
-              const permissionError = new Error(
-                `Permission denied: Unable to push commits to branch '${branch}'. ` +
-                  `Please rebase your branch from the main/master branch to allow Claude to commit.\n\n` +
-                  `Original error: ${errorText}`,
-              );
-              throw permissionError;
-            }
-
-            // For other errors, use the original message
             const error = new Error(
               `Failed to update reference: ${updateRefResponse.status} - ${errorText}`,
             );
 
+            // Only retry on 403 errors - these are the intermittent failures we're targeting
+            if (updateRefResponse.status === 403) {
+              throw error;
+            }
+
             // For non-403 errors, fail immediately without retry
             console.error("Non-retryable error:", updateRefResponse.status);
             throw error;
@@ -598,23 +559,16 @@ server.tool(
 
           if (!updateRefResponse.ok) {
             const errorText = await updateRefResponse.text();
-
-            // Provide a more helpful error message for 403 permission errors
-            if (updateRefResponse.status === 403) {
-              console.log("Received 403 error, will retry...");
-              const permissionError = new Error(
-                `Permission denied: Unable to push commits to branch '${branch}'. ` +
-                  `Please rebase your branch from the main/master branch to allow Claude to commit.\n\n` +
-                  `Original error: ${errorText}`,
-              );
-              throw permissionError;
-            }
-
-            // For other errors, use the original message
             const error = new Error(
               `Failed to update reference: ${updateRefResponse.status} - ${errorText}`,
             );
 
+            // Only retry on 403 errors - these are the intermittent failures we're targeting
+            if (updateRefResponse.status === 403) {
+              console.log("Received 403 error, will retry...");
+              throw error;
+            }
+
             // For non-403 errors, fail immediately without retry
             console.error("Non-retryable error:", updateRefResponse.status);
             throw error;

src/mcp/github-inline-comment-server.ts

@@ -3,7 +3,6 @@ import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { z } from "zod";
 import { createOctokit } from "../github/api/client";
-import { sanitizeContent } from "../github/utils/sanitizer";
 
 // Get repository and PR information from environment variables
 const REPO_OWNER = process.env.REPO_OWNER;
@@ -82,9 +81,6 @@ server.tool(
 
       const octokit = createOctokit(githubToken).rest;
 
-      // Sanitize the comment body to remove any potential GitHub tokens
-      const sanitizedBody = sanitizeContent(body);
-
       // Validate that either line or both startLine and line are provided
       if (!line && !startLine) {
         throw new Error(
@@ -108,7 +104,7 @@ server.tool(
         owner,
         repo,
         pull_number,
-        body: sanitizedBody,
+        body,
         path,
         side: side || "RIGHT",
         commit_id: commit_id || pr.data.head.sha,

src/mcp/install-mcp-server.ts

@@ -1,7 +1,6 @@
 import * as core from "@actions/core";
 import { GITHUB_API_URL, GITHUB_SERVER_URL } from "../github/api/config";
-import type { GitHubContext } from "../github/context";
-import { isEntityContext } from "../github/context";
+import type { ParsedGitHubContext } from "../github/context";
 import { Octokit } from "@octokit/rest";
 
 type PrepareConfigParams = {
@@ -10,9 +9,10 @@ type PrepareConfigParams = {
   repo: string;
   branch: string;
   baseBranch: string;
+  additionalMcpConfig?: string;
   claudeCommentId?: string;
   allowedTools: string[];
-  context: GitHubContext;
+  context: ParsedGitHubContext;
 };
 
 async function checkActionsReadPermission(
@@ -56,6 +56,7 @@ export async function prepareMcpConfig(
     repo,
     branch,
     baseBranch,
+    additionalMcpConfig,
     claudeCommentId,
     allowedTools,
     context,
@@ -67,10 +68,6 @@ export async function prepareMcpConfig(
       tool.startsWith("mcp__github__"),
     );
 
-    const hasInlineCommentTools = allowedToolsList.some((tool) =>
-      tool.startsWith("mcp__github_inline_comment__"),
-    );
-
     const baseMcpConfig: { mcpServers: Record<string, unknown> } = {
       mcpServers: {},
     };
@@ -114,32 +111,10 @@ export async function prepareMcpConfig(
       };
     }
 
-    // Include inline comment server for PRs when requested via allowed tools
-    if (
-      isEntityContext(context) &&
-      context.isPR &&
-      (hasGitHubMcpTools || hasInlineCommentTools)
-    ) {
-      baseMcpConfig.mcpServers.github_inline_comment = {
-        command: "bun",
-        args: [
-          "run",
-          `${process.env.GITHUB_ACTION_PATH}/src/mcp/github-inline-comment-server.ts`,
-        ],
-        env: {
-          GITHUB_TOKEN: githubToken,
-          REPO_OWNER: owner,
-          REPO_NAME: repo,
-          PR_NUMBER: context.entityNumber?.toString() || "",
-          GITHUB_API_URL: GITHUB_API_URL,
-        },
-      };
-    }
-
     // CI server is included when we have a workflow token and context is a PR
     const hasWorkflowToken = !!process.env.DEFAULT_WORKFLOW_TOKEN;
 
-    if (isEntityContext(context) && context.isPR && hasWorkflowToken) {
+    if (context.isPR && hasWorkflowToken) {
       // Verify the token actually has actions:read permission
       const actuallyHasPermission = await checkActionsReadPermission(
         process.env.DEFAULT_WORKFLOW_TOKEN || "",
@@ -191,8 +166,38 @@ export async function prepareMcpConfig(
       };
     }
 
-    // Return only our GitHub servers config
-    // User's config will be passed as separate --mcp-config flags
+    // Merge with additional MCP config if provided
+    if (additionalMcpConfig && additionalMcpConfig.trim()) {
+      try {
+        const additionalConfig = JSON.parse(additionalMcpConfig);
+
+        // Validate that parsed JSON is an object
+        if (typeof additionalConfig !== "object" || additionalConfig === null) {
+          throw new Error("MCP config must be a valid JSON object");
+        }
+
+        core.info(
+          "Merging additional MCP server configuration with built-in servers",
+        );
+
+        // Merge configurations with user config overriding built-in servers
+        const mergedConfig = {
+          ...baseMcpConfig,
+          ...additionalConfig,
+          mcpServers: {
+            ...baseMcpConfig.mcpServers,
+            ...additionalConfig.mcpServers,
+          },
+        };
+
+        return JSON.stringify(mergedConfig, null, 2);
+      } catch (parseError) {
+        core.warning(
+          `Failed to parse additional MCP config: ${parseError}. Using base config only.`,
+        );
+      }
+    }
+
     return JSON.stringify(baseMcpConfig, null, 2);
   } catch (error) {
     core.setFailed(`Install MCP server failed with error: ${error}`);

src/modes/agent/index.ts

@@ -2,9 +2,6 @@ import * as core from "@actions/core";
 import { mkdir, writeFile } from "fs/promises";
 import type { Mode, ModeOptions, ModeResult } from "../types";
 import type { PreparedContext } from "../../create-prompt/types";
-import { prepareMcpConfig } from "../../mcp/install-mcp-server";
-import { parseAllowedTools } from "./parse-tools";
-import { configureGitAuth } from "../../github/operations/git-config";
 
 /**
  * Agent mode implementation.
@@ -42,96 +39,85 @@ export const agentMode: Mode = {
     return false;
   },
 
-  async prepare({
-    context,
-    githubToken,
-    octokit,
-  }: ModeOptions): Promise<ModeResult> {
-    // Configure git authentication for agent mode (same as tag mode)
-    if (!context.inputs.useCommitSigning) {
-      try {
-        // Get the authenticated user (will be claude[bot] when using Claude App token)
-        const { data: authenticatedUser } =
-          await octokit.rest.users.getAuthenticated();
-        const user = {
-          login: authenticatedUser.login,
-          id: authenticatedUser.id,
-        };
-
-        // Use the shared git configuration function
-        await configureGitAuth(githubToken, context, user);
-      } catch (error) {
-        console.error("Failed to configure git authentication:", error);
-        // Continue anyway - git operations may still work with default config
-      }
-    }
+  async prepare({ context, githubToken }: ModeOptions): Promise<ModeResult> {
+    // Agent mode handles automation events and any event with explicit prompts
+    
+    console.log(`Agent mode: githubToken provided: ${!!githubToken}, length: ${githubToken?.length || 0}`);
 
+    // TODO: handle by createPrompt (similar to tag and review modes)
     // Create prompt directory
-    await mkdir(`${process.env.RUNNER_TEMP || "/tmp"}/claude-prompts`, {
+    await mkdir(`${process.env.RUNNER_TEMP}/claude-prompts`, {
       recursive: true,
     });
-
-    // Write the prompt file - use the user's prompt directly
+    // Write the prompt file - the base action requires a prompt_file parameter.
+    // Use the unified prompt field from v1.0.
     const promptContent =
       context.inputs.prompt ||
       `Repository: ${context.repository.owner}/${context.repository.repo}`;
-
     await writeFile(
-      `${process.env.RUNNER_TEMP || "/tmp"}/claude-prompts/claude-prompt.txt`,
+      `${process.env.RUNNER_TEMP}/claude-prompts/claude-prompt.txt`,
       promptContent,
     );
 
-    // Parse allowed tools from user's claude_args
-    const userClaudeArgs = process.env.CLAUDE_ARGS || "";
-    const allowedTools = parseAllowedTools(userClaudeArgs);
+    // Agent mode: User has full control via claudeArgs
+    // No default tools are enforced - Claude Code's defaults will apply
 
-    // Check for branch info from environment variables (useful for auto-fix workflows)
-    const claudeBranch = process.env.CLAUDE_BRANCH || undefined;
-    const baseBranch =
-      process.env.BASE_BRANCH || context.inputs.baseBranch || "main";
+    // Always include the GitHub comment server in agent mode
+    // This ensures GitHub tools (PR reviews, comments, etc.) work out of the box
+    // without requiring users to manually configure the MCP server
+    const mcpConfig: any = {
+      mcpServers: {
+        "github-comment-server": {
+          command: "bun",
+          args: [
+            "run",
+            `${process.env.GITHUB_ACTION_PATH}/src/mcp/github-comment-server.ts`,
+          ],
+          env: {
+            GITHUB_TOKEN: githubToken || "",
+            REPO_OWNER: context.repository.owner,
+            REPO_NAME: context.repository.repo,
+            GITHUB_EVENT_NAME: process.env.GITHUB_EVENT_NAME || "",
+            GITHUB_API_URL:
+              process.env.GITHUB_API_URL || "https://api.github.com",
+          },
+        },
+      },
+    };
 
-    // Detect current branch from GitHub environment
-    const currentBranch =
-      claudeBranch ||
-      process.env.GITHUB_HEAD_REF ||
-      process.env.GITHUB_REF_NAME ||
-      "main";
-
-    // Get our GitHub MCP servers config
-    const ourMcpConfig = await prepareMcpConfig({
-      githubToken,
-      owner: context.repository.owner,
-      repo: context.repository.repo,
-      branch: currentBranch,
-      baseBranch: baseBranch,
-      claudeCommentId: undefined, // No tracking comment in agent mode
-      allowedTools,
-      context,
-    });
-
-    // Build final claude_args with multiple --mcp-config flags
-    let claudeArgs = "";
-
-    // Add our GitHub servers config if we have any
-    const ourConfig = JSON.parse(ourMcpConfig);
-    if (ourConfig.mcpServers && Object.keys(ourConfig.mcpServers).length > 0) {
-      const escapedOurConfig = ourMcpConfig.replace(/'/g, "'\\''");
-      claudeArgs = `--mcp-config '${escapedOurConfig}'`;
+    // Add user-provided additional MCP config if any
+    const additionalMcpConfig = process.env.MCP_CONFIG || "";
+    if (additionalMcpConfig.trim()) {
+      try {
+        const additional = JSON.parse(additionalMcpConfig);
+        if (additional && typeof additional === "object") {
+          // Merge mcpServers if both have them
+          if (additional.mcpServers && mcpConfig.mcpServers) {
+            Object.assign(mcpConfig.mcpServers, additional.mcpServers);
+          } else {
+            Object.assign(mcpConfig, additional);
+          }
+        }
+      } catch (error) {
+        core.warning(`Failed to parse additional MCP config: ${error}`);
+      }
     }
 
-    // Append user's claude_args (which may have more --mcp-config flags)
-    claudeArgs = `${claudeArgs} ${userClaudeArgs}`.trim();
-
+    // Agent mode: pass through user's claude_args with MCP config
+    const userClaudeArgs = process.env.CLAUDE_ARGS || "";
+    const escapedMcpConfig = JSON.stringify(mcpConfig).replace(/'/g, "'\\''");
+    const claudeArgs =
+      `--mcp-config '${escapedMcpConfig}' ${userClaudeArgs}`.trim();
     core.setOutput("claude_args", claudeArgs);
 
     return {
       commentId: undefined,
       branchInfo: {
-        baseBranch: baseBranch,
-        currentBranch: baseBranch, // Use base branch as current when creating new branch
-        claudeBranch: claudeBranch,
+        baseBranch: "",
+        currentBranch: "",
+        claudeBranch: undefined,
       },
-      mcpConfig: ourMcpConfig,
+      mcpConfig: JSON.stringify(mcpConfig),
     };
   },
 

src/modes/agent/parse-tools.ts

@@ -1,22 +0,0 @@
-export function parseAllowedTools(claudeArgs: string): string[] {
-  // Match --allowedTools followed by the value
-  // Handle both quoted and unquoted values
-  const patterns = [
-    /--allowedTools\s+"([^"]+)"/, // Double quoted
-    /--allowedTools\s+'([^']+)'/, // Single quoted
-    /--allowedTools\s+([^\s]+)/, // Unquoted
-  ];
-
-  for (const pattern of patterns) {
-    const match = claudeArgs.match(pattern);
-    if (match && match[1]) {
-      // Don't return if the value starts with -- (another flag)
-      if (match[1].startsWith("--")) {
-        return [];
-      }
-      return match[1].split(",").map((t) => t.trim());
-    }
-  }
-
-  return [];
-}

src/modes/tag/index.ts

@@ -100,13 +100,15 @@ export const tagMode: Mode = {
 
     await createPrompt(tagMode, modeContext, githubData, context);
 
-    // Get our GitHub MCP servers configuration
-    const ourMcpConfig = await prepareMcpConfig({
+    // Get MCP configuration
+    const additionalMcpConfig = process.env.MCP_CONFIG || "";
+    const mcpConfig = await prepareMcpConfig({
       githubToken,
       owner: context.repository.owner,
       repo: context.repository.repo,
       branch: branchInfo.claudeBranch || branchInfo.currentBranch,
       baseBranch: branchInfo.baseBranch,
+      additionalMcpConfig,
       claudeCommentId: commentId.toString(),
       allowedTools: [],
       context,
@@ -148,19 +150,14 @@ export const tagMode: Mode = {
 
     const userClaudeArgs = process.env.CLAUDE_ARGS || "";
 
-    // Build complete claude_args with multiple --mcp-config flags
-    let claudeArgs = "";
-
-    // Add our GitHub servers config
-    const escapedOurConfig = ourMcpConfig.replace(/'/g, "'\\''");
-    claudeArgs = `--mcp-config '${escapedOurConfig}'`;
-
-    // Add required tools for tag mode
-    claudeArgs += ` --allowedTools "${tagModeTools.join(",")}"`;
-
-    // Append user's claude_args (which may have more --mcp-config flags)
+    // Build complete claude_args with MCP config (as JSON string), tools, and user args
+    // Note: Once Claude supports multiple --mcp-config flags, we can pass as file path
+    // Escape single quotes in JSON to prevent shell injection
+    const escapedMcpConfig = mcpConfig.replace(/'/g, "'\\''");
+    let claudeArgs = `--mcp-config '${escapedMcpConfig}' `;
+    claudeArgs += `--allowedTools "${tagModeTools.join(",")}" `;
     if (userClaudeArgs) {
-      claudeArgs += ` ${userClaudeArgs}`;
+      claudeArgs += userClaudeArgs;
     }
 
     core.setOutput("claude_args", claudeArgs.trim());
@@ -168,7 +165,7 @@ export const tagMode: Mode = {
     return {
       commentId,
       branchInfo,
-      mcpConfig: ourMcpConfig,
+      mcpConfig,
     };
   },
 

test/install-mcp-server.test.ts

@@ -50,6 +50,14 @@ describe("prepareMcpConfig", () => {
     },
   };
 
+  const mockPRContextWithSigning: ParsedGitHubContext = {
+    ...mockPRContext,
+    inputs: {
+      ...mockPRContext.inputs,
+      useCommitSigning: true,
+    },
+  };
+
   beforeEach(() => {
     consoleInfoSpy = spyOn(core, "info").mockImplementation(() => {});
     consoleWarningSpy = spyOn(core, "warning").mockImplementation(() => {});
@@ -90,9 +98,19 @@ describe("prepareMcpConfig", () => {
     expect(parsed.mcpServers.github_comment.env.GITHUB_TOKEN).toBe(
       "test-token",
     );
+    expect(parsed.mcpServers.github_comment.env.REPO_OWNER).toBe("test-owner");
+    expect(parsed.mcpServers.github_comment.env.REPO_NAME).toBe("test-repo");
   });
 
-  test("should include file ops server when commit signing is enabled", async () => {
+  test("should return file ops server when commit signing is enabled", async () => {
+    const contextWithSigning = {
+      ...mockContext,
+      inputs: {
+        ...mockContext.inputs,
+        useCommitSigning: true,
+      },
+    };
+
     const result = await prepareMcpConfig({
       githubToken: "test-token",
       owner: "test-owner",
@@ -100,16 +118,19 @@ describe("prepareMcpConfig", () => {
       branch: "test-branch",
       baseBranch: "main",
       allowedTools: [],
-      context: mockContextWithSigning,
+      context: contextWithSigning,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers).toBeDefined();
     expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_comment).toBeDefined();
     expect(parsed.mcpServers.github_file_ops).toBeDefined();
     expect(parsed.mcpServers.github_file_ops.env.GITHUB_TOKEN).toBe(
       "test-token",
     );
+    expect(parsed.mcpServers.github_file_ops.env.REPO_OWNER).toBe("test-owner");
+    expect(parsed.mcpServers.github_file_ops.env.REPO_NAME).toBe("test-repo");
     expect(parsed.mcpServers.github_file_ops.env.BRANCH_NAME).toBe(
       "test-branch",
     );
@@ -122,37 +143,49 @@ describe("prepareMcpConfig", () => {
       repo: "test-repo",
       branch: "test-branch",
       baseBranch: "main",
-      allowedTools: ["mcp__github__create_issue", "mcp__github__create_pr"],
+      allowedTools: [
+        "mcp__github__create_issue",
+        "mcp__github_file_ops__commit_files",
+      ],
       context: mockContext,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers).toBeDefined();
     expect(parsed.mcpServers.github).toBeDefined();
-    expect(parsed.mcpServers.github.command).toBe("docker");
+    expect(parsed.mcpServers.github_comment).toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).not.toBeDefined();
     expect(parsed.mcpServers.github.env.GITHUB_PERSONAL_ACCESS_TOKEN).toBe(
       "test-token",
     );
   });
 
-  test("should include inline comment server for PRs when tools are allowed", async () => {
+  test("should not include github MCP server when only file_ops tools are allowed", async () => {
+    const contextWithSigning = {
+      ...mockContext,
+      inputs: {
+        ...mockContext.inputs,
+        useCommitSigning: true,
+      },
+    };
+
     const result = await prepareMcpConfig({
       githubToken: "test-token",
       owner: "test-owner",
       repo: "test-repo",
       branch: "test-branch",
       baseBranch: "main",
-      allowedTools: ["mcp__github_inline_comment__create_inline_comment"],
-      context: mockPRContext,
+      allowedTools: [
+        "mcp__github_file_ops__commit_files",
+        "mcp__github_file_ops__update_claude_comment",
+      ],
+      context: contextWithSigning,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers).toBeDefined();
-    expect(parsed.mcpServers.github_inline_comment).toBeDefined();
-    expect(parsed.mcpServers.github_inline_comment.env.GITHUB_TOKEN).toBe(
-      "test-token",
-    );
-    expect(parsed.mcpServers.github_inline_comment.env.PR_NUMBER).toBe("456");
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
   });
 
   test("should include comment server when no GitHub tools are allowed and signing disabled", async () => {
@@ -162,7 +195,7 @@ describe("prepareMcpConfig", () => {
       repo: "test-repo",
       branch: "test-branch",
       baseBranch: "main",
-      allowedTools: [],
+      allowedTools: ["Edit", "Read", "Write"],
       context: mockContext,
     });
 
@@ -173,7 +206,301 @@ describe("prepareMcpConfig", () => {
     expect(parsed.mcpServers.github_comment).toBeDefined();
   });
 
-  test("should set GITHUB_ACTION_PATH correctly", async () => {
+  test("should return base config when additional config is empty string", async () => {
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: "",
+      allowedTools: [],
+      context: mockContext,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.mcpServers).toBeDefined();
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_comment).toBeDefined();
+    expect(consoleWarningSpy).not.toHaveBeenCalled();
+  });
+
+  test("should return base config when additional config is whitespace only", async () => {
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: "   \n\t  ",
+      allowedTools: [],
+      context: mockContext,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.mcpServers).toBeDefined();
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_comment).toBeDefined();
+    expect(consoleWarningSpy).not.toHaveBeenCalled();
+  });
+
+  test("should merge valid additional config with base config", async () => {
+    const additionalConfig = JSON.stringify({
+      mcpServers: {
+        custom_server: {
+          command: "custom-command",
+          args: ["arg1", "arg2"],
+          env: {
+            CUSTOM_ENV: "custom-value",
+          },
+        },
+      },
+    });
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: additionalConfig,
+      allowedTools: [
+        "mcp__github__create_issue",
+        "mcp__github_file_ops__commit_files",
+      ],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(consoleInfoSpy).toHaveBeenCalledWith(
+      "Merging additional MCP server configuration with built-in servers",
+    );
+    expect(parsed.mcpServers.github).toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+    expect(parsed.mcpServers.custom_server).toBeDefined();
+    expect(parsed.mcpServers.custom_server.command).toBe("custom-command");
+    expect(parsed.mcpServers.custom_server.args).toEqual(["arg1", "arg2"]);
+    expect(parsed.mcpServers.custom_server.env.CUSTOM_ENV).toBe("custom-value");
+  });
+
+  test("should override built-in servers when additional config has same server names", async () => {
+    const additionalConfig = JSON.stringify({
+      mcpServers: {
+        github: {
+          command: "overridden-command",
+          args: ["overridden-arg"],
+          env: {
+            OVERRIDDEN_ENV: "overridden-value",
+          },
+        },
+      },
+    });
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: additionalConfig,
+      allowedTools: [
+        "mcp__github__create_issue",
+        "mcp__github_file_ops__commit_files",
+      ],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(consoleInfoSpy).toHaveBeenCalledWith(
+      "Merging additional MCP server configuration with built-in servers",
+    );
+    expect(parsed.mcpServers.github.command).toBe("overridden-command");
+    expect(parsed.mcpServers.github.args).toEqual(["overridden-arg"]);
+    expect(parsed.mcpServers.github.env.OVERRIDDEN_ENV).toBe(
+      "overridden-value",
+    );
+    expect(
+      parsed.mcpServers.github.env.GITHUB_PERSONAL_ACCESS_TOKEN,
+    ).toBeUndefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+  });
+
+  test("should merge additional root-level properties", async () => {
+    const additionalConfig = JSON.stringify({
+      customProperty: "custom-value",
+      anotherProperty: {
+        nested: "value",
+      },
+      mcpServers: {
+        custom_server: {
+          command: "custom",
+        },
+      },
+    });
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: additionalConfig,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.customProperty).toBe("custom-value");
+    expect(parsed.anotherProperty).toEqual({ nested: "value" });
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.custom_server).toBeDefined();
+  });
+
+  test("should handle invalid JSON gracefully", async () => {
+    const invalidJson = "{ invalid json }";
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: invalidJson,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining("Failed to parse additional MCP config:"),
+    );
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+  });
+
+  test("should handle non-object JSON values", async () => {
+    const nonObjectJson = JSON.stringify("string value");
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: nonObjectJson,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining("Failed to parse additional MCP config:"),
+    );
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining("MCP config must be a valid JSON object"),
+    );
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+  });
+
+  test("should handle null JSON value", async () => {
+    const nullJson = JSON.stringify(null);
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: nullJson,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining("Failed to parse additional MCP config:"),
+    );
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining("MCP config must be a valid JSON object"),
+    );
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+  });
+
+  test("should handle array JSON value", async () => {
+    const arrayJson = JSON.stringify([1, 2, 3]);
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: arrayJson,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    // Arrays are objects in JavaScript, so they pass the object check
+    // But they'll fail when trying to spread or access mcpServers property
+    expect(consoleInfoSpy).toHaveBeenCalledWith(
+      "Merging additional MCP server configuration with built-in servers",
+    );
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+    // The array will be spread into the config (0: 1, 1: 2, 2: 3)
+    expect(parsed[0]).toBe(1);
+    expect(parsed[1]).toBe(2);
+    expect(parsed[2]).toBe(3);
+  });
+
+  test("should merge complex nested configurations", async () => {
+    const additionalConfig = JSON.stringify({
+      mcpServers: {
+        server1: {
+          command: "cmd1",
+          env: { KEY1: "value1" },
+        },
+        server2: {
+          command: "cmd2",
+          env: { KEY2: "value2" },
+        },
+        github_file_ops: {
+          command: "overridden",
+          env: { CUSTOM: "value" },
+        },
+      },
+      otherConfig: {
+        nested: {
+          deeply: "value",
+        },
+      },
+    });
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      additionalMcpConfig: additionalConfig,
+      allowedTools: [],
+      context: mockContextWithSigning,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.mcpServers.server1).toBeDefined();
+    expect(parsed.mcpServers.server2).toBeDefined();
+    expect(parsed.mcpServers.github).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops.command).toBe("overridden");
+    expect(parsed.mcpServers.github_file_ops.env.CUSTOM).toBe("value");
+    expect(parsed.otherConfig.nested.deeply).toBe("value");
+  });
+
+  test("should preserve GITHUB_ACTION_PATH in file_ops server args", async () => {
+    const oldEnv = process.env.GITHUB_ACTION_PATH;
     process.env.GITHUB_ACTION_PATH = "/test/action/path";
 
     const result = await prepareMcpConfig({
@@ -187,12 +514,15 @@ describe("prepareMcpConfig", () => {
     });
 
     const parsed = JSON.parse(result);
-    expect(parsed.mcpServers.github_file_ops.args).toContain(
+    expect(parsed.mcpServers.github_file_ops.args[1]).toBe(
       "/test/action/path/src/mcp/github-file-ops-server.ts",
     );
+
+    process.env.GITHUB_ACTION_PATH = oldEnv;
   });
 
-  test("should use current working directory when GITHUB_WORKSPACE is not set", async () => {
+  test("should use process.cwd() when GITHUB_WORKSPACE is not set", async () => {
+    const oldEnv = process.env.GITHUB_WORKSPACE;
     delete process.env.GITHUB_WORKSPACE;
 
     const result = await prepareMcpConfig({
@@ -207,11 +537,22 @@ describe("prepareMcpConfig", () => {
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers.github_file_ops.env.REPO_DIR).toBe(process.cwd());
+
+    process.env.GITHUB_WORKSPACE = oldEnv;
   });
 
-  test("should include CI server when context.isPR is true and DEFAULT_WORKFLOW_TOKEN exists", async () => {
+  test("should include github_ci server when context.isPR is true and workflow token is present", async () => {
+    const oldEnv = process.env.DEFAULT_WORKFLOW_TOKEN;
     process.env.DEFAULT_WORKFLOW_TOKEN = "workflow-token";
 
+    const contextWithPermissions = {
+      ...mockPRContext,
+      inputs: {
+        ...mockPRContext.inputs,
+        useCommitSigning: true,
+      },
+    };
+
     const result = await prepareMcpConfig({
       githubToken: "test-token",
       owner: "test-owner",
@@ -219,15 +560,16 @@ describe("prepareMcpConfig", () => {
       branch: "test-branch",
       baseBranch: "main",
       allowedTools: [],
-      context: mockPRContext,
+      context: contextWithPermissions,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers.github_ci).toBeDefined();
     expect(parsed.mcpServers.github_ci.env.GITHUB_TOKEN).toBe("workflow-token");
     expect(parsed.mcpServers.github_ci.env.PR_NUMBER).toBe("456");
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
 
-    delete process.env.DEFAULT_WORKFLOW_TOKEN;
+    process.env.DEFAULT_WORKFLOW_TOKEN = oldEnv;
   });
 
   test("should not include github_ci server when context.isPR is false", async () => {
@@ -238,14 +580,16 @@ describe("prepareMcpConfig", () => {
       branch: "test-branch",
       baseBranch: "main",
       allowedTools: [],
-      context: mockContext,
+      context: mockContextWithSigning,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers.github_ci).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
   });
 
-  test("should not include github_ci server when DEFAULT_WORKFLOW_TOKEN is missing", async () => {
+  test("should not include github_ci server when workflow token is not present", async () => {
+    const oldTokenEnv = process.env.DEFAULT_WORKFLOW_TOKEN;
     delete process.env.DEFAULT_WORKFLOW_TOKEN;
 
     const result = await prepareMcpConfig({
@@ -255,10 +599,73 @@ describe("prepareMcpConfig", () => {
       branch: "test-branch",
       baseBranch: "main",
       allowedTools: [],
-      context: mockPRContext,
+      context: mockPRContextWithSigning,
     });
 
     const parsed = JSON.parse(result);
     expect(parsed.mcpServers.github_ci).not.toBeDefined();
+    expect(parsed.mcpServers.github_file_ops).toBeDefined();
+
+    process.env.DEFAULT_WORKFLOW_TOKEN = oldTokenEnv;
+  });
+
+  test("should include github_ci server when workflow token is present for PR context", async () => {
+    const oldTokenEnv = process.env.DEFAULT_WORKFLOW_TOKEN;
+    process.env.DEFAULT_WORKFLOW_TOKEN = "workflow-token";
+
+    const contextWithPermissions = {
+      ...mockPRContext,
+      inputs: {
+        ...mockPRContext.inputs,
+      },
+    };
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      allowedTools: [],
+      context: contextWithPermissions,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.mcpServers.github_ci).toBeDefined();
+    expect(parsed.mcpServers.github_ci.env.GITHUB_TOKEN).toBe("workflow-token");
+
+    process.env.DEFAULT_WORKFLOW_TOKEN = oldTokenEnv;
+  });
+
+  test("should warn when workflow token lacks actions:read permission", async () => {
+    const oldTokenEnv = process.env.DEFAULT_WORKFLOW_TOKEN;
+    process.env.DEFAULT_WORKFLOW_TOKEN = "invalid-token";
+
+    const contextWithPermissions = {
+      ...mockPRContext,
+      inputs: {
+        ...mockPRContext.inputs,
+      },
+    };
+
+    const result = await prepareMcpConfig({
+      githubToken: "test-token",
+      owner: "test-owner",
+      repo: "test-repo",
+      branch: "test-branch",
+      baseBranch: "main",
+      allowedTools: [],
+      context: contextWithPermissions,
+    });
+
+    const parsed = JSON.parse(result);
+    expect(parsed.mcpServers.github_ci).toBeDefined();
+    expect(consoleWarningSpy).toHaveBeenCalledWith(
+      expect.stringContaining(
+        "The github_ci MCP server requires 'actions: read' permission",
+      ),
+    );
+
+    process.env.DEFAULT_WORKFLOW_TOKEN = oldTokenEnv;
   });
 });

test/modes/agent.test.ts

@@ -104,12 +104,6 @@ describe("Agent Mode", () => {
       eventName: "workflow_dispatch",
     });
 
-    // Save original env vars and set test values
-    const originalHeadRef = process.env.GITHUB_HEAD_REF;
-    const originalRefName = process.env.GITHUB_REF_NAME;
-    delete process.env.GITHUB_HEAD_REF;
-    delete process.env.GITHUB_REF_NAME;
-
     // Set CLAUDE_ARGS environment variable
     process.env.CLAUDE_ARGS = "--model claude-sonnet-4 --max-turns 10";
 
@@ -126,12 +120,12 @@ describe("Agent Mode", () => {
     expect(callArgs[1]).toContain("--mcp-config");
     expect(callArgs[1]).toContain("--model claude-sonnet-4 --max-turns 10");
 
-    // Verify return structure - should use "main" as fallback when no env vars set
+    // Verify return structure
     expect(result).toEqual({
       commentId: undefined,
       branchInfo: {
-        baseBranch: "main",
-        currentBranch: "main",
+        baseBranch: "",
+        currentBranch: "",
         claudeBranch: undefined,
       },
       mcpConfig: expect.any(String),
@@ -139,10 +133,6 @@ describe("Agent Mode", () => {
 
     // Clean up
     delete process.env.CLAUDE_ARGS;
-    if (originalHeadRef !== undefined)
-      process.env.GITHUB_HEAD_REF = originalHeadRef;
-    if (originalRefName !== undefined)
-      process.env.GITHUB_REF_NAME = originalRefName;
   });
 
   test("prepare method creates prompt file with correct content", async () => {

test/modes/parse-tools.test.ts

@@ -1,71 +0,0 @@
-import { describe, test, expect } from "bun:test";
-import { parseAllowedTools } from "../../src/modes/agent/parse-tools";
-
-describe("parseAllowedTools", () => {
-  test("parses unquoted tools", () => {
-    const args = "--allowedTools mcp__github__*,mcp__github_comment__*";
-    expect(parseAllowedTools(args)).toEqual([
-      "mcp__github__*",
-      "mcp__github_comment__*",
-    ]);
-  });
-
-  test("parses double-quoted tools", () => {
-    const args = '--allowedTools "mcp__github__*,mcp__github_comment__*"';
-    expect(parseAllowedTools(args)).toEqual([
-      "mcp__github__*",
-      "mcp__github_comment__*",
-    ]);
-  });
-
-  test("parses single-quoted tools", () => {
-    const args = "--allowedTools 'mcp__github__*,mcp__github_comment__*'";
-    expect(parseAllowedTools(args)).toEqual([
-      "mcp__github__*",
-      "mcp__github_comment__*",
-    ]);
-  });
-
-  test("returns empty array when no allowedTools", () => {
-    const args = "--someOtherFlag value";
-    expect(parseAllowedTools(args)).toEqual([]);
-  });
-
-  test("handles empty string", () => {
-    expect(parseAllowedTools("")).toEqual([]);
-  });
-
-  test("handles duplicate --allowedTools flags", () => {
-    const args = "--allowedTools --allowedTools mcp__github__*";
-    // Should not match the first one since the value is another flag
-    expect(parseAllowedTools(args)).toEqual([]);
-  });
-
-  test("handles typo --alloedTools", () => {
-    const args = "--alloedTools mcp__github__*";
-    expect(parseAllowedTools(args)).toEqual([]);
-  });
-
-  test("handles multiple flags with allowedTools in middle", () => {
-    const args =
-      '--flag1 value1 --allowedTools "mcp__github__*" --flag2 value2';
-    expect(parseAllowedTools(args)).toEqual(["mcp__github__*"]);
-  });
-
-  test("trims whitespace from tool names", () => {
-    const args = "--allowedTools 'mcp__github__* , mcp__github_comment__* '";
-    expect(parseAllowedTools(args)).toEqual([
-      "mcp__github__*",
-      "mcp__github_comment__*",
-    ]);
-  });
-
-  test("handles tools with special characters", () => {
-    const args =
-      '--allowedTools "mcp__github__create_issue,mcp__github_comment__update"';
-    expect(parseAllowedTools(args)).toEqual([
-      "mcp__github__create_issue",
-      "mcp__github_comment__update",
-    ]);
-  });
-});

test/sanitizer.test.ts

@@ -7,7 +7,6 @@ import {
   normalizeHtmlEntities,
   sanitizeContent,
   stripHtmlComments,
-  redactGitHubTokens,
 } from "../src/github/utils/sanitizer";
 
 describe("stripInvisibleCharacters", () => {
@@ -243,109 +242,6 @@ describe("sanitizeContent", () => {
   });
 });
 
-describe("redactGitHubTokens", () => {
-  it("should redact personal access tokens (ghp_)", () => {
-    const token = "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";
-    expect(redactGitHubTokens(`Token: ${token}`)).toBe(
-      "Token: [REDACTED_GITHUB_TOKEN]",
-    );
-    expect(redactGitHubTokens(`Here's a token: ${token} in text`)).toBe(
-      "Here's a token: [REDACTED_GITHUB_TOKEN] in text",
-    );
-  });
-
-  it("should redact OAuth tokens (gho_)", () => {
-    const token = "gho_16C7e42F292c6912E7710c838347Ae178B4a";
-    expect(redactGitHubTokens(`OAuth: ${token}`)).toBe(
-      "OAuth: [REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should redact installation tokens (ghs_)", () => {
-    const token = "ghs_xz7yzju2SZjGPa0dUNMAx0SH4xDOCS31LXQW";
-    expect(redactGitHubTokens(`Install token: ${token}`)).toBe(
-      "Install token: [REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should redact refresh tokens (ghr_)", () => {
-    const token = "ghr_1B4a2e77838347a253e56d7b5253e7d11667";
-    expect(redactGitHubTokens(`Refresh: ${token}`)).toBe(
-      "Refresh: [REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should redact fine-grained tokens (github_pat_)", () => {
-    const token =
-      "github_pat_11ABCDEFG0example5of9_2nVwvsylpmOLboQwTPTLewDcE621dQ0AAaBBCCDDEEFFHH";
-    expect(redactGitHubTokens(`Fine-grained: ${token}`)).toBe(
-      "Fine-grained: [REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should handle tokens in code blocks", () => {
-    const content = `\`\`\`bash
-export GITHUB_TOKEN=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
-\`\`\``;
-    const expected = `\`\`\`bash
-export GITHUB_TOKEN=[REDACTED_GITHUB_TOKEN]
-\`\`\``;
-    expect(redactGitHubTokens(content)).toBe(expected);
-  });
-
-  it("should handle multiple tokens in one text", () => {
-    const content =
-      "Token 1: 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 and token 2: gho_16C7e42F292c6912E7710c838347Ae178B4a";
-    expect(redactGitHubTokens(content)).toBe(
-      "Token 1: [REDACTED_GITHUB_TOKEN] and token 2: [REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should handle tokens in URLs", () => {
-    const content =
-      "https://api.github.com/user?access_token=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";
-    expect(redactGitHubTokens(content)).toBe(
-      "https://api.github.com/user?access_token=[REDACTED_GITHUB_TOKEN]",
-    );
-  });
-
-  it("should not redact partial matches or invalid tokens", () => {
-    const content =
-      "This is not a token: ghp_short or gho_toolong1234567890123456789012345678901234567890";
-    expect(redactGitHubTokens(content)).toBe(content);
-  });
-
-  it("should preserve normal text", () => {
-    const content = "Normal text with no tokens";
-    expect(redactGitHubTokens(content)).toBe(content);
-  });
-
-  it("should handle edge cases", () => {
-    expect(redactGitHubTokens("")).toBe("");
-    expect(redactGitHubTokens("ghp_")).toBe("ghp_");
-    expect(redactGitHubTokens("github_pat_short")).toBe("github_pat_short");
-  });
-});
-
-describe("sanitizeContent with token redaction", () => {
-  it("should redact tokens as part of full sanitization", () => {
-    const content = `
-      <!-- Hidden comment with token: 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 -->
-      Here's some text with a token: gho_16C7e42F292c6912E7710c838347Ae178B4a
-      And invisible chars: test\u200Btoken
-    `;
-
-    const sanitized = sanitizeContent(content);
-
-    expect(sanitized).not.toContain("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");
-    expect(sanitized).not.toContain("gho_16C7e42F292c6912E7710c838347Ae178B4a");
-    expect(sanitized).not.toContain("<!-- Hidden comment");
-    expect(sanitized).not.toContain("\u200B");
-    expect(sanitized).toContain("[REDACTED_GITHUB_TOKEN]");
-    expect(sanitized).toContain("Here's some text with a token:");
-  });
-});
-
 describe("stripHtmlComments (legacy)", () => {
   it("should remove HTML comments", () => {
     expect(stripHtmlComments("Hello <!-- example -->World")).toBe(

undefined/claude-prompts/claude-prompt.txt

@@ -0,0 +1 @@
+Custom prompt content